Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme79115g00001 GGGATTCATGGTGAAGACATAGGTGGAAGCATCAATCCAATGTCCTCGTTAGGAAATAAAAACATAAAGAAACCCTCGGAGAGGAAACGTGGAAAAACTGAGAAATCAATTAGTCTTGAAGTTCTACAACGGTATTTCGCCGGGAGTCTTAAAGATGCTGCAAAAAGCCTTGGCGTTTGCCCTACTACAATGAAGCGCATATGCAGGCAGCATGGGATATCCCGTTGGCCATCTCGAAAGATCAACAAGGTTAACCGTTCCCTGTCCAAGCTCAAGCGTGTTATTGAATCTGTCCAAGGTGCTGAAGGAGC 311 0.4534 GIHGEDIGGSINPMSSLGNKNIKKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGA 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme79115g00001 104 ProSiteProfiles RWP-RK domain profile. 23 104 IPR003035 -
Trme79115g00001 104 PANTHER PROTEIN NLP8 18 104 IPR045012 GO:0003700
Trme79115g00001 104 Pfam RWP-RK domain 36 84 IPR003035 -
Trme79115g00001 104 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme79115g00001 Trme-Chr79115 2 777 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme79115g00001 20 104 NLP Transcription Factor Family AT1G64530 87.059 1.64e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trme79115g00001 RWP-RK 5.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme79115g00001 - - lja:Lj5g3v1999250.1 186.808