Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme790876g00001 TGTGCTATTTGCTTGACTGATTATCTTCCAAAGGAAACAATACGGTGTGTTCCCGATTGTCAACATTGTTTTCATGCGGAGTGTGTTGATGAGTGGCTTCGGATGAGTGCCACGTGTCCTTTGTGTCGGAATTCTCCTGCTGTTTCGCCGGTGACTACGCCGGTTGTTACTCCGTTGTCGGAGCTTGTTCCTCTGGCTTTTCATGCCAGGTGA 213 0.4883 CAICLTDYLPKETIRCVPDCQHCFHAECVDEWLRMSATCPLCRNSPAVSPVTTPVVTPLSELVPLAFHAR 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme790876g00001 70 SMART ring_2 1 42 IPR001841 -
Trme790876g00001 70 PANTHER RING-H2 FINGER PROTEIN ATL67 1 68 IPR044289 GO:0016567|GO:0016740
Trme790876g00001 70 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 49 IPR013083 -
Trme790876g00001 70 SUPERFAMILY RING/U-box 1 49 - -
Trme790876g00001 70 ProSiteProfiles Zinc finger RING-type profile. 1 43 IPR001841 -
Trme790876g00001 70 Pfam Ring finger domain 1 43 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme790876g00001 Trme-Chr790876 2 214 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme790876g00001 1 70 C3H Transcription Factor Family AT5G07040 65.714 4.33e-28 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme790876g00001 - - qsa:O6P43_029738 122.864