Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme79036g00001 ATGAATGATGTGAAGATTAATGTTCCGGTTATTTTCATGTTCCAGGAGTATGCAGAAGAGGAGCTTGAATGGCTATCCAACAAAGATGCATTTCCGGCTGTTGAAACATTTGTCGACATATCCTGTATTCAACCAGATATGTCGAAGTATCAAAAGACAACACCAACGCTCGAGAACAGCACAAGCAGTAGCAACAACAGCAATAACAGTTCCAACAGCATTACCCTCTTAAGTGGCTACAATCAAATGAAGTTCCCTGTCCGTGCAAGGAGCAAGTCTCGTAGTAAGCCTCGCCTTGTTGACACCTTGAACCAGCAATTCCCGTGGAAACAACCGAGTACCAAAATTTCCAGAGAACAAGTGAGACCAACCTCAAACATTGAGAGGAAATGTCATCACTGTGGAGCTGATAATACTCCACAATGGCGTGCAGGTCCCAATGGTCCCAAAACCCTTTGTAATGCATGTGGGGTTAGGTATAAGTCTGGCCGACTTGTGCCTGAATACCGCCCTGCA 516 0.4496 MNDVKINVPVIFMFQEYAEEELEWLSNKDAFPAVETFVDISCIQPDMSKYQKTTPTLENSTSSSNNSNNSSNSITLLSGYNQMKFPVRARSKSRSKPRLVDTLNQQFPWKQPSTKISREQVRPTSNIERKCHHCGADNTPQWRAGPNGPKTLCNACGVRYKSGRLVPEYRPA 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme79036g00001 172 Gene3D - 124 172 IPR013088 GO:0006355|GO:0008270
Trme79036g00001 172 ProSiteProfiles GATA-type zinc finger domain profile. 125 161 IPR000679 GO:0006355|GO:0043565
Trme79036g00001 172 PANTHER GATA TRANSCRIPTION FACTOR 19 172 - -
Trme79036g00001 172 FunFam GATA transcription factor 125 172 - -
Trme79036g00001 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 122 163 - -
Trme79036g00001 172 CDD ZnF_GATA 130 172 IPR000679 GO:0006355|GO:0043565
Trme79036g00001 172 ProSitePatterns GATA-type zinc finger domain. 131 156 IPR000679 GO:0006355|GO:0043565
Trme79036g00001 172 Pfam GATA zinc finger 131 164 IPR000679 GO:0006355|GO:0043565
Trme79036g00001 172 SMART GATA_3 125 171 IPR000679 GO:0006355|GO:0043565
Trme79036g00001 172 MobiDBLite consensus disorder prediction 52 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme79036g00001 Trme-Chr79036 1 516 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme79036g00001 19 172 C2C2-Gata Transcription Factor Family AT3G24050 41.530 1.13e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trme79036g00001 GATA 1e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme79036g00001 - - psat:127090991 244.588