Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme78915g00001 GGGAAGCAAAGTTTGGAGACAATATGCTTGCTTCTGGCCTACAAAATAAGATATCCGGACAGAGTTTATCTCTTAAGAGGAAACCATGAAGATGCAAAGATAAACCGAATATACGGTTTTTATGACGAATGTAAAAGGAGGTTCAATGTCAGGCTATGGAAGATATTCACCGATTGCTTTAACTGTTTGCCGGTGGCTGCACTTATCGATGACAAAATACTTTGTATGCATGGAGGACTCTCTCCAGAACTAGAAAATTTAAATCAGATAAGAGAGGTTACAAGGCCTACCGAAATTCCAGATAACGGTCTCTTGTGTGATCTGCTTTGGTCTGATCCTGATGCTAGTACTGAGGGTTGGGCAGATAGTGACCGAGGCGTTTCATGGGTCATCAGGTAA 399 0.4185 GKQSLETICLLLAYKIRYPDRVYLLRGNHEDAKINRIYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDDKILCMHGGLSPELENLNQIREVTRPTEIPDNGLLCDLLWSDPDASTEGWADSDRGVSWVIR 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme78915g00001 132 PRINTS Serine/threonine phosphatase family signature 24 48 IPR006186 GO:0016787
Trme78915g00001 132 PRINTS Serine/threonine phosphatase family signature 87 114 IPR006186 GO:0016787
Trme78915g00001 132 PRINTS Serine/threonine phosphatase family signature 58 84 IPR006186 GO:0016787
Trme78915g00001 132 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 129 - -
Trme78915g00001 132 Gene3D - 1 132 IPR029052 -
Trme78915g00001 132 SUPERFAMILY Metallo-dependent phosphatases 1 130 IPR029052 -
Trme78915g00001 132 Pfam Calcineurin-like phosphoesterase 5 112 IPR004843 GO:0016787
Trme78915g00001 132 ProSitePatterns Serine/threonine specific protein phosphatases signature. 25 30 IPR006186 GO:0016787
Trme78915g00001 132 SMART pp2a_7 1 131 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme78915g00001 Trme-Chr78915 129 591 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme78915g00001 1 128 Calmodulin-binding Proteins AT5G63870 29.012 9.23e-17 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme78915g00001 K06269 - gmx:100805030 259.225