Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme78912g00001 AGATTTGCCCTATCAGCTACTGAAGTTGGTTCTTTGATAGCCATGGGCCCCCAAGATTCATGTGAATTCTTTCATGACCCCTCAATGAAATCAAGTAATGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAGCCTCATAGCAATGGCTACTTCGTCTCTCTGATTGTTGTTAACACCGTGTTAAATACGAAAGACAATTTCAGTGTTCCTGTTACAACTGCTGAGTTTGCTGTGATGAAGACAGCTTGCAGTGTATGCTTCTTTTCTACTTAG 273 0.4066 RFALSATEVGSLIAMGPQDSCEFFHDPSMKSSNAGQVRKSLSIKPHSNGYFVSLIVVNTVLNTKDNFSVPVTTAEFAVMKTACSVCFFST 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme78912g00001 90 Pfam Whirly transcription factor 2 81 IPR013742 GO:0003697|GO:0006355|GO:0006952
Trme78912g00001 90 SUPERFAMILY ssDNA-binding transcriptional regulator domain 2 85 IPR009044 GO:0003677|GO:0006355
Trme78912g00001 90 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 2 85 IPR013742 GO:0003697|GO:0006355|GO:0006952
Trme78912g00001 90 Gene3D Transcriptional Coactivator Pc4; Chain A 1 87 IPR009044 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme78912g00001 1 87 Whirly Transcription Factor Family AT1G71260 71.910 1.79e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Trme78912g00001 Whirly 3.2e-30 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme78912g00001 K26561 - gmx:100817863 149.058