Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme78832g00001 AAATTTTACTTTGTGAATGCTGACGCAGAACTCAAACTTGGGGAACCTGTTTTGGATTGGCCTACAAGAAAGCGAGTAGCTCTGGGAACTGCACGGGGCCTAGAATATCTTCACGAGCATTGCAATCCTAAGATTATTCATCGGGATGTGAAGGCAGCTAATGTWTTATTAGATGAAGATTTTGAAGCAGTTGTCGGAGACTTTGGTTTGGCAAAGTTAGTAGATATTCGAAAGACTAATGTGACCACTCAAGTTCGTGGGACAATGGGCCACATAGCTCCTGAATATTTGTCGACTGGAAAGTCTTCAGAAAGGACCGATGTTTTTGGTTATGGGATTATGCTTCTGGAGCTTGTTACTGGTCAA 366 0.4235 KFYFVNADAELKLGEPVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDIRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQ 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme78832g00001 122 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 122 - -
Trme78832g00001 122 Pfam Protein kinase domain 23 122 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme78832g00001 122 FunFam Os07g0541700 protein 10 88 - -
Trme78832g00001 122 ProSiteProfiles Protein kinase domain profile. 1 122 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme78832g00001 122 SUPERFAMILY Protein kinase-like (PK-like) 16 122 IPR011009 -
Trme78832g00001 122 ProSitePatterns Serine/Threonine protein kinases active-site signature. 45 57 IPR008271 GO:0004672|GO:0006468
Trme78832g00001 122 Gene3D Transferase(Phosphotransferase) domain 1 8 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme78832g00001 Trme-Chr78832 1 366 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme78832g00001 10 122 Receptor kinase-like Gene Family AT5G10290 92.035 4.29e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trme78832g00001 Pkinase 1.6e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme78832g00001 - - vum:124828345 230.335