Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7882g00001 GACACTGGTGCACCAGCCAAAAAACCCATTTATCAGACAAAGAAGGGGAAATCAACCAATCGAAATCATAATGGTGCCGCTGCTGTCAAGATAGATGAAAACGTTGAAGTAAAGGAAACTACCGCTGATTTAGATTCAAAGGAACTGGAAAAGGTTGAAGAAGTGGAGTCGGTGCAGATGGAGGACAAAGTTGAACTTCCTGAAGCTGTTGAAGAGGATGCAGTGGAAGAAGATGATGATGAGGATGAATGGGATGCAAAAAGCTGGGATGATGTCAATCTGAATAAAAGGGGTGCATTTGCTGATGAAGAAGTTGACTCCGAGCCTGAACGGATTGTCAAAAAAGAGATTAAAAATGTACCTGCTAAAAATGCTGGTGCTACAAATAAAACTGTTTCGAAGCCTGTGGCTGAAGAAACTGAAGATAGAAAACAGGCCAAAGTTGTGGTTGAGGACAAAAAGGAAAAGCATGATCCACAACAGTCTGCTGTGCCTCCTAAGCCAAGTGAGGGGAACCTCCGATCGCCAATTTGCTGCATCATGGGTCACGTGGACACTGGAAAAACCAAGCTTCTAGATTGTATTCGAGGTACCAATGTTCAAGAAGGTGAGGCTGGTGGTATCACCCAACAGATTGGCGCAACATACTTTCCTGCTGAGAACATTCGTGAAAGAACTAAGGAACTGAAAGCTGATGCAACACTGAAAGTTCCTGGTCTACTGGTTATTGATACCCCTGGCCATGAATCATTCAATAACTTAAGGTCTCGGGGTTCAGGTCTATGTGATATTGCAATTTTGGTTGTTGACATTATGCATGGCTTAGAACCACAAACTATAGAATCACTCAATCTATTAAAAATGAGGAACACCGAATTCATTATTGCATTAAATAAGGTTGACAGGCTTTATGGATGGAAAGTATGTCGCAATGCTCCAATTCGTAAAGCAATGTTGCAGCAGTCCAAGGATGTTCAAAATGAGTTTAATATGCGGCTCACTCAGGTAGTTTACAAACATTTCTTTTAA 1029 0.4169 DTGAPAKKPIYQTKKGKSTNRNHNGAAAVKIDENVEVKETTADLDSKELEKVEEVESVQMEDKVELPEAVEEDAVEEDDDEDEWDAKSWDDVNLNKRGAFADEEVDSEPERIVKKEIKNVPAKNAGATNKTVSKPVAEETEDRKQAKVVVEDKKEKHDPQQSAVPPKPSEGNLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADATLKVPGLLVIDTPGHESFNNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIIALNKVDRLYGWKVCRNAPIRKAMLQQSKDVQNEFNMRLTQVVYKHFF 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7882g00001 342 PRINTS GTP-binding elongation factor signature 177 190 IPR000795 GO:0003924|GO:0005525
Trme7882g00001 342 PRINTS GTP-binding elongation factor signature 293 302 IPR000795 GO:0003924|GO:0005525
Trme7882g00001 342 PRINTS GTP-binding elongation factor signature 241 251 IPR000795 GO:0003924|GO:0005525
Trme7882g00001 342 PRINTS GTP-binding elongation factor signature 257 268 IPR000795 GO:0003924|GO:0005525
Trme7882g00001 342 Coils Coil 136 156 - -
Trme7882g00001 342 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 18 337 IPR015760 -
Trme7882g00001 342 MobiDBLite consensus disorder prediction 124 174 - -
Trme7882g00001 342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 339 IPR027417 -
Trme7882g00001 342 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 173 342 IPR000795 GO:0003924|GO:0005525
Trme7882g00001 342 NCBIfam small GTP-binding protein domain 178 302 IPR005225 GO:0005525
Trme7882g00001 342 MobiDBLite consensus disorder prediction 1 26 - -
Trme7882g00001 342 FunFam Eukaryotic translation initiation factor 5B 167 341 - -
Trme7882g00001 342 CDD IF2_eIF5B 176 338 - -
Trme7882g00001 342 MobiDBLite consensus disorder prediction 68 90 - -
Trme7882g00001 342 Pfam Elongation factor Tu GTP binding domain 177 332 IPR000795 GO:0003924|GO:0005525
Trme7882g00001 342 Gene3D - 168 341 IPR027417 -
Trme7882g00001 342 MobiDBLite consensus disorder prediction 135 161 - -
Trme7882g00001 342 MobiDBLite consensus disorder prediction 68 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7882g00001 Trme-Chr7882 2 1766 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7882g00001 6 337 Eukaryotic Initiation Factors Gene Family AT1G76810 58.427 3.34e-118 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7882g00001 K03243 - gmx:100814875 493.426