Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme78748g00001 | ATGGAAAGTGAAATAGGTGAATTTATTCATCCAGATGGATGGACACCTTGGGAAGGAAACTTTGCATTGAATACATTGTATTATGCTGAGTATAATAACACTGGACCTGGTGCTAGTACTAGTGCTAGAGTTAAGTGGCCTGGTTACAAAGTTATTAACAAAGAAGAAGCTAGTAAGTACACTGTAGCAAATTTCTTGAAAGGTACATGGGTTCAAACCTCAGGTGTACCTTCACAGCAGGGATTGTACAATTAA | 255 | 0.3804 | MESEIGEFIHPDGWTPWEGNFALNTLYYAEYNNTGPGASTSARVKWPGYKVINKEEASKYTVANFLKGTWVQTSGVPSQQGLYN | 84 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme78748g00001 | 84 | Gene3D | - | 1 | 84 | IPR012334 | - | |
| Trme78748g00001 | 84 | PANTHER | PECTINESTERASE | 1 | 72 | - | - | |
| Trme78748g00001 | 84 | SUPERFAMILY | Pectin lyase-like | 1 | 80 | IPR011050 | - | |
| Trme78748g00001 | 84 | Pfam | Pectinesterase | 1 | 68 | IPR000070 | GO:0030599|GO:0042545 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme78748g00001 | Trme-Chr78748 | 105 | 359 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme78748g00001 | 1 | 84 | Carbohydrate Esterase | AT2G26450 | 58.824 | 2.77e-29 | 107 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme78748g00001 | - | - | gmx:100793421 | 153.68 |