Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme786g00001 | GTCACTTATCAAACCGACCTTTTCCTTGATAAAAACAAAGACTATGTTGTTCCCGAGCATGCTGCGCTGCTCAGTGCTTCCAGTTGCTCCTTTGTTTCAGGACTTTTCCCACCTTTACCTGAGGAAACTATGAAATCAACAAAGTTCTCATCCATAGCCGCTCAGTTTAAGCAACAACTGCAATCTTTGCTTGAAACATTGAATGCCACTGAGCCACACTACATTCGTTGCGTAAAGCCAAATAATCTTCTTAAACCAGGGATATTCGAGAACAACGATGTGTTGCAGCAGCTTCGATGTGGGGGTGTAATGGAGGCAATTAGGATTAGTTGTGCTGGATATCCAACTAGAAAGACCTTCGATGAATTTGTTCAGCGGTTTACTATATTGGATCCTAAGGTTCTAAAATCATGCCCTGATGAGATGACTGCTTGCAAGAGGCTTCTAGATAAAGCGAATCTTAAAGGTTATCAGGTTGGAAAGACAAAAGTGTTTTTGAGGGCAGGTCAAATGGCAGAACTAGATGCATGCCGTGCTGAGGTCCTAGGAAGATCTGCAATCGTTATTCAGAAAAAAGCTCGCACGTTTATTTGTGAGAAAAAGTACAAATTATTGCGATTCTCTGCCACAGAAGTACAAAGGGCTGTTAGAGGACAACTTGCAAGACTTTGTTACGAACGCATGAGAAGAGAGGCTGCCTCTTTGATAATTCAGAAACAATGCCGCATGTATCTTTCGAGAAGTGCTTATAAAACTACCTATGCTAGAGCTATTTGTATTCAAACCGGCATGCGAGGGATGGCTGCTAGAAATGAACTTAGATTCAGGAGGCGGACAAAAGCTGCAATTAAAATTCAGGGTCGATACAGATGTCATCGAGCTCGTACTTATTACAAAAGGCTAAAGAGAGCAACAATTGCAGTACAATGTTCGTGGAGGCGAACAAGAGCACGACGAGAACTTCGAAAGCTTAGAATGGCTGCTAAGGAATCCAAGGCCCTAGAAGCCGCGAAACAAAATCTAGAAAAGCAAGTTGAGGAACTAATTTCGTCTCTAGAATCAGAGAAGAGAATGAGGGAAGCCAAGACACAGGAAAATGAAAAATTACAACATGCTTTGGAAGAGATGGAGATTCGGTTCGAAGAAACTAAAACAAAACTCACTCAGGAATTCGAAGAAACTAAAACGAAACTCACTCAGGAATGTGAGGCTGCGAAGAAAGTAGCTGAGCAAACACCAACTATACATGAAAATGAAAATAATGTTGCTGACAACGAATTGATAAATAAGCTTACTGCAGAGAATGAAAAACTCAAGGAGCTTGTTAATTCAATGGAAAAGAAAACTAAACTGGAGCTTCCTGATAATCTTACTGACAATGAAGTGATTAATAAGCTTGCTGAAGAAAATGGACAACTCAAGGACCTTGTTAATTCAATGGAAAAGAAAACTAAACTGGAGCTTCCTGATAATGTTACTGACAATGAAGTGATTAATAAGCTTACTGAAGAAAATGAAAAACTCAAG | 1527 | 0.4014 | VTYQTDLFLDKNKDYVVPEHAALLSASSCSFVSGLFPPLPEETMKSTKFSSIAAQFKQQLQSLLETLNATEPHYIRCVKPNNLLKPGIFENNDVLQQLRCGGVMEAIRISCAGYPTRKTFDEFVQRFTILDPKVLKSCPDEMTACKRLLDKANLKGYQVGKTKVFLRAGQMAELDACRAEVLGRSAIVIQKKARTFICEKKYKLLRFSATEVQRAVRGQLARLCYERMRREAASLIIQKQCRMYLSRSAYKTTYARAICIQTGMRGMAARNELRFRRRTKAAIKIQGRYRCHRARTYYKRLKRATIAVQCSWRRTRARRELRKLRMAAKESKALEAAKQNLEKQVEELISSLESEKRMREAKTQENEKLQHALEEMEIRFEETKTKLTQEFEETKTKLTQECEAAKKVAEQTPTIHENENNVADNELINKLTAENEKLKELVNSMEKKTKLELPDNLTDNEVINKLAEENGQLKDLVNSMEKKTKLELPDNVTDNEVINKLTEENEKLK | 509 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme786g00001 | 509 | Coils | Coil | 463 | 483 | - | - | |
| Trme786g00001 | 509 | ProSiteProfiles | IQ motif profile. | 278 | 307 | IPR000048 | GO:0005515 | |
| Trme786g00001 | 509 | FunFam | unconventional myosin-Va | 281 | 328 | - | - | |
| Trme786g00001 | 509 | Coils | Coil | 314 | 408 | - | - | |
| Trme786g00001 | 509 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 233 | IPR027417 | - | |
| Trme786g00001 | 509 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 233 | 329 | IPR027417 | - | |
| Trme786g00001 | 509 | Gene3D | - | 280 | 330 | - | - | |
| Trme786g00001 | 509 | Gene3D | - | 232 | 279 | - | - | |
| Trme786g00001 | 509 | Gene3D | - | 181 | 231 | - | - | |
| Trme786g00001 | 509 | ProSiteProfiles | IQ motif profile. | 255 | 282 | IPR000048 | GO:0005515 | |
| Trme786g00001 | 509 | Coils | Coil | 421 | 448 | - | - | |
| Trme786g00001 | 509 | SMART | iq_5 | 300 | 322 | IPR000048 | GO:0005515 | |
| Trme786g00001 | 509 | SMART | iq_5 | 277 | 299 | IPR000048 | GO:0005515 | |
| Trme786g00001 | 509 | SMART | iq_5 | 181 | 203 | IPR000048 | GO:0005515 | |
| Trme786g00001 | 509 | SMART | iq_5 | 252 | 274 | IPR000048 | GO:0005515 | |
| Trme786g00001 | 509 | SMART | iq_5 | 229 | 251 | IPR000048 | GO:0005515 | |
| Trme786g00001 | 509 | SMART | iq_5 | 204 | 226 | IPR000048 | GO:0005515 | |
| Trme786g00001 | 509 | ProSiteProfiles | IQ motif profile. | 230 | 256 | IPR000048 | GO:0005515 | |
| Trme786g00001 | 509 | Pfam | IQ calmodulin-binding motif | 184 | 203 | IPR000048 | GO:0005515 | |
| Trme786g00001 | 509 | Pfam | IQ calmodulin-binding motif | 232 | 251 | IPR000048 | GO:0005515 | |
| Trme786g00001 | 509 | Pfam | IQ calmodulin-binding motif | 279 | 299 | IPR000048 | GO:0005515 | |
| Trme786g00001 | 509 | Gene3D | Kinesin motor domain | 41 | 113 | IPR036961 | - | |
| Trme786g00001 | 509 | Gene3D | - | 114 | 177 | - | - | |
| Trme786g00001 | 509 | PANTHER | MYOSIN | 1 | 280 | - | - | |
| Trme786g00001 | 509 | Pfam | Myosin head (motor domain) | 1 | 167 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Trme786g00001 | 509 | ProSiteProfiles | Myosin motor domain profile. | 1 | 179 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Trme786g00001 | 509 | ProSiteProfiles | IQ motif profile. | 301 | 330 | IPR000048 | GO:0005515 | |
| Trme786g00001 | 509 | ProSiteProfiles | IQ motif profile. | 205 | 234 | IPR000048 | GO:0005515 | |
| Trme786g00001 | 509 | FunFam | unconventional myosin-Va | 232 | 280 | - | - | |
| Trme786g00001 | 509 | SMART | MYSc_2a | 1 | 180 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme786g00001 | Trme-Chr786 | 88 | 3618 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme786g00001 | 1 | 448 | Myosins gene family | AT5G43900 | 60.177 | 2.33e-175 | 532 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme786g00001 | K10357 | - | gmx:100788123 | 748.043 |