Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme78646g00001 ATGGCAGAACCAACCAATGTGAGATCAATGTCTTTTGTAGGTACACATGAATATCTTGCACCTGAAATCATCAAAGGAGAAGGACATGGTAGTGCAGTAGATTGGTGGACTTTCGGAATCTTCTTGTATGAATTGTTGCACGGTGCAACGCCTTTTAAAGGCGCAGGATATAAAGCAACACTATTCAATGTTGTTGGACAGCCATTAAGGTTTCCAGATAGTCCTCAAATTAGTCCTGTGGCTAAAGATCTTATTAGAGGATTGTTGGTGAAGGAACCTCAGAAGAGAATTGCATACAAAAGAGGAGCAACAGAAATAAAACAGCATCCATTTTTTGAAGGAGTGAATTGGGCTCTAGTTAGAAGTGCAACACCACCACATATACCAGATATGATAGACTTTTCAAAGTATGCTAAAAAAGAAACAGCACCACCACCAGTTGATAAGAAGATGCCAGAAATTGCTAGTGATAAAATTGCTAGTGATAAAAAATGCAAAAATTCAACTGATAATTCTTATGTAGATTTTGAGTATTTTTAG 540 0.3722 MAEPTNVRSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLHGATPFKGAGYKATLFNVVGQPLRFPDSPQISPVAKDLIRGLLVKEPQKRIAYKRGATEIKQHPFFEGVNWALVRSATPPHIPDMIDFSKYAKKETAPPPVDKKMPEIASDKIASDKKCKNSTDNSYVDFEYF 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme78646g00001 179 PANTHER FLIPPASE KINASE 1-RELATED 1 141 - -
Trme78646g00001 179 Gene3D Transferase(Phosphotransferase) domain 1 8 130 - -
Trme78646g00001 179 Pfam Protein kinase domain 9 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme78646g00001 179 SUPERFAMILY Protein kinase-like (PK-like) 7 143 IPR011009 -
Trme78646g00001 179 ProSiteProfiles Protein kinase domain profile. 1 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme78646g00001 179 SMART serkin_6 1 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme78646g00001 179 FunFam Serine/threonine-protein kinase AGC1-7 5 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme78646g00001 Trme-Chr78646 7 546 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme78646g00001 1 179 AGC Kinase Gene Family AT1G16440 70.718 2.67e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trme78646g00001 Pkinase 1.5e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme78646g00001 - - vvo:131637783 334.724