Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme78644g00001 ATGAGTGGTGATCCCTCTAATACTCCGGTTCGAGCAACAAACACTGGAATTAAGAAGAAAGCTATCAAGTCATTCACCACGGTAAGTTACTCGACCGAGCTTAACTTGCCGAGTTTGGACTCAGAGTGTGTGATATGTTTATCGGAGTTCACTAATGGCGATAAAGTACGCCTTTTGCCAAAGTGTAACCATGGTTTTCATGTTCGTTGCATTGACAAATGGCTAAGTTCGCATTCGTCTTGTCCCAAATGTAGACAGTGCCTTATTGAGACTTGTAAAAAAATTGTTGGATCACAAGGTAGTTCATCTCAACCACAACCTATGTTGTTTCCGGTGCCGGAAACAATTGTAACTATAGCACCACTTGAGCCAGAAGGTTTGGTGAGAAACTATAGGGAG 399 0.4236 MSGDPSNTPVRATNTGIKKKAIKSFTTVSYSTELNLPSLDSECVICLSEFTNGDKVRLLPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCKKIVGSQGSSSQPQPMLFPVPETIVTIAPLEPEGLVRNYRE 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme78644g00001 133 CDD RING-H2_EL5-like 42 85 - -
Trme78644g00001 133 ProSiteProfiles Zinc finger RING-type profile. 43 85 IPR001841 -
Trme78644g00001 133 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 90 IPR013083 -
Trme78644g00001 133 Pfam Ring finger domain 42 85 IPR001841 -
Trme78644g00001 133 PANTHER RING-H2 FINGER PROTEIN ATL78 9 127 IPR044602 GO:0016567|GO:0016740
Trme78644g00001 133 SMART ring_2 43 84 IPR001841 -
Trme78644g00001 133 SUPERFAMILY RING/U-box 21 90 - -
Trme78644g00001 133 FunFam RING-H2 finger protein ATL73 4 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme78644g00001 Trme-Chr78644 247 645 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme78644g00001 9 89 C3H Transcription Factor Family AT1G20823 54.321 2.39e-28 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme78644g00001 K19040 - gmx:100807227 203.371