Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme78399g00001 ATGGGTCCAGAAGACGAAGAGTCACATATTTCACTTCTAGCAGCCGGAACAGTTGGCTACATGGATCCGGAATACTATAGGCTACAACATTTGACGACAAAAAGTGACGTGTATAGTTTCGGCGTTGTTTTATTAGAACTTTTAAGTGGATATAAAGCTATACATAAAAATGAAAATGGAGTGCCAAGAAATGTGGTTGATTTTGTTGTACCCTTTATTGTTCAAGATGAGATTCATAGAATTTTGGATCCAAAATTGCCACCACCAACACCATTTGAGATTGAAGGTGTGGCTTTTGTAGGTTATTTAGCTTGTGATTGTGTTCGTTTAGAAGGTAGAGATAGACCAAGTATGAGTCATGTTGTGAATAGTTTAGAGAAAGCACTAGAGGCTTGTTTGGCACAACCAATAAWTKGTGGGTCCAATAGGACCACTACTAGCACTATTTCTAATGAGTGA 459 0.3791 MGPEDEESHISLLAAGTVGYMDPEYYRLQHLTTKSDVYSFGVVLLELLSGYKAIHKNENGVPRNVVDFVVPFIVQDEIHRILDPKLPPPTPFEIEGVAFVGYLACDCVRLEGRDRPSMSHVVNSLEKALEACLAQPIXXGSNRTTTSTISNE 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme78399g00001 152 Gene3D Transferase(Phosphotransferase) domain 1 1 140 - -
Trme78399g00001 152 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 3 135 IPR044815 GO:0004674
Trme78399g00001 152 Pfam Protein kinase domain 15 123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme78399g00001 152 SUPERFAMILY Protein kinase-like (PK-like) 9 129 IPR011009 -
Trme78399g00001 152 ProSiteProfiles Protein kinase domain profile. 1 129 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme78399g00001 Trme-Chr78399 153 611 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme78399g00001 1 146 Receptor kinase-like Gene Family AT5G47850 64.189 6.46e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Trme78399g00001 Pkinase 4.9e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme78399g00001 - - pvu:PHAVU_011G003100g 253.062