Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme78352g00001 ATGAAAAGATCAAGAAGTTCACTGTCCAGCGATGAAGAAGAAGATGATGATGCTAAGATCATGATGAAGAAGCAAGAAGTTATTGTTCAAAAATCAACACACAAGTGCAATATTTGTGGCAAGAGTTTTANCAATGGAAAAGCATTAGGTGGTCACAGAAGATCTCACTTTCTTAAGAAAAAACCTAATCATCATCAATCACCAGAGCTGAAAACCCCTAGTAAGAATATTAGGGTTAGTTGTTTCAACGATGATGAAGATATTGATGGTAAAAAGAATCAAATTACTCGTTGTTATATTTGCAATAAGAAGTTTCCAACAAAGAATGCTTTGTATGGTCACATGAGATCTCATCCTGATAGGGTTTGTAAAGGAGTCAGCCCTCCTTCAAATTATGATATTCAAAATTCTTCTTCTTCCAACAATTCTAATAAAAAAGAAGATCGAGATGATTATGATGATGGTGATGATGATGGTGGTGGTG 484 0.345 MKRSRSSLSSDEEEDDDAKIMMKKQEVIVQKSTHKCNICGKSFXNGKALGGHRRSHFLKKKPNHHQSPELKTPSKNIRVSCFNDDEDIDGKKNQITRCYICNKKFPTKNALYGHMRSHPDRVCKGVSPPSNYDIQNSSSSNNSNKKEDRDDYDDGDDDGGG 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme78352g00001 161 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Trme78352g00001 161 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 118 IPR013087 -
Trme78352g00001 161 Gene3D Classic Zinc Finger 93 157 - -
Trme78352g00001 161 Gene3D Classic Zinc Finger 7 92 - -
Trme78352g00001 161 Pfam C2H2-type zinc finger 96 120 - -
Trme78352g00001 161 Pfam C2H2-type zinc finger 34 56 - -
Trme78352g00001 161 MobiDBLite consensus disorder prediction 50 76 - -
Trme78352g00001 161 SUPERFAMILY beta-beta-alpha zinc fingers 33 118 IPR036236 -
Trme78352g00001 161 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Trme78352g00001 161 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 81 145 - -
Trme78352g00001 161 MobiDBLite consensus disorder prediction 111 161 - -
Trme78352g00001 161 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Trme78352g00001 161 SMART c2h2final6 96 118 IPR013087 -
Trme78352g00001 161 SMART c2h2final6 34 56 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme78352g00001 34 129 C2H2 Transcription Factor Family AT2G26940 36.538 3.49e-14 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme78352g00001 zf-C2H2_6 4e-06 CL0361