Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme78309g00001 CCTGAGAATTCTCCACCAAATGGTGCTGGAAGTGGTATTGAGAGAAGTGAGAAAAACAAAGGGCTAAGTAAAGGTGCTGTGGTTGGCATTGTTGATCAAGAAGAAAATGATCTTAACAAGGGAAGGAAAGGAAGGAAAGAGTGTTTTTGTTTCAGAAAGGATGATTCTGAGGCACTATCTGATAATGTTGAGCAATATGATCTTGTTCCATTAGATTCCCAGGTCGCTTTTGATTTGGATGAGCTTCTTAAGGCTTCAGCTTTTGTTCTTGGTAAGAGTGGAATAGGGATTATGTACAAAGTTGTTCTTGAAGAGGGGATTGCTTTGGCTGTGAGAAGATTGGGGGAGGGAGGTTCTCAGAGGTTTAAAGAGTTTCAAACAGAAGTAGAAGCTATAGGGAAGTTAAGACACCCAAATATCGCTACTCTTAGAGCCTATTATTGGTCTGTTGATGAGAAGCTTCTCATATATGATTATATACCAAATGGAAGCCTTGCTACAGCAATTCATGGTAAGTTTTAA 522 0.3946 PENSPPNGAGSGIERSEKNKGLSKGAVVGIVDQEENDLNKGRKGRKECFCFRKDDSEALSDNVEQYDLVPLDSQVAFDLDELLKASAFVLGKSGIGIMYKVVLEEGIALAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIATLRAYYWSVDEKLLIYDYIPNGSLATAIHGKF 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme78309g00001 173 Gene3D Phosphorylase Kinase; domain 1 53 159 - -
Trme78309g00001 173 ProSiteProfiles Protein kinase domain profile. 84 173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme78309g00001 173 MobiDBLite consensus disorder prediction 1 27 - -
Trme78309g00001 173 SUPERFAMILY Protein kinase-like (PK-like) 89 171 IPR011009 -
Trme78309g00001 173 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 46 171 IPR046959 -
Trme78309g00001 173 FunFam Leucine-rich repeat receptor-like protein kinase 67 159 - -
Trme78309g00001 173 Pfam Protein tyrosine and serine/threonine kinase 98 170 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme78309g00001 Trme-Chr78309 1 600 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme78309g00001 1 172 Receptor kinase-like Gene Family AT2G01210 61.809 9.45e-75 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme78309g00001 PK_Tyr_Ser-Thr 2.7e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme78309g00001 - - gmx:100807517 290.426