Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7820g00001 ATGTATTATCGTGGAGTTATGGCTGGCCAAATTGGTCATGGTATCATGGAGGAAGAATTATGGAGGAAAGGACCTTGGACTGCTGAAGAGGATAGGTTGCTAATTGAGTATGTTAGGGTGCATGGTGAAGGGAGGTGGAATTCTGTTGCTAGACTTGCAGGATTGAGAAGGAATGGAAAGAGTTGCAGATTGAGATGGGTGAATTATCTAAGGCCAGATCTCAAAAGGGGTCAAATCACACCACAAGAAGAGAGCATAATTCTAGACCTGCATGCTAGATGGGGAAACAGGTGGTCAACAATTGCAAGAAACTTACCGGGAAGAACGGACAATGAAATAAAGAACTATTGGAGGACTCATTTCAAGAAAAAGGCAAAAAATCCTTCTGATGCCGCCGAAAAGGCGAAAAACCGATTCCTAAGGAAGCAACTATTTCACCAGCAACAACAACAGTTGCAACAAGTTCAACAGCAGCAGCAACAACAACTGCAATTCAACTTGGACATGAAAGATGTCATGTCCTTGTTTGAGGAAAATAATATTAATAACCATAAAGTTCCTTACATATCCCAAACTAGACAAGAAATGTTCAACATGTGTCCAAACACAACAGAAGAACAGAGTTACTTTATGTTTAATGGAAACTCTTCTGTACAAGATTCTTCAGCAGATGATGTTTTGTGGGATGGACTGTGGAATTTGGATGATGTTCATGGAAATTTCAGTGTTGCTAATGCAACAAACAAAACTG 751 0.4008 MYYRGVMAGQIGHGIMEEELWRKGPWTAEEDRLLIEYVRVHGEGRWNSVARLAGLRRNGKSCRLRWVNYLRPDLKRGQITPQEESIILDLHARWGNRWSTIARNLPGRTDNEIKNYWRTHFKKKAKNPSDAAEKAKNRFLRKQLFHQQQQQLQQVQQQQQQQLQFNLDMKDVMSLFEENNINNHKVPYISQTRQEMFNMCPNTTEEQSYFMFNGNSSVQDSSADDVLWDGLWNLDDVHGNFSVANATNKT 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7820g00001 250 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Trme7820g00001 250 Gene3D - 23 75 - -
Trme7820g00001 250 FunFam Myb transcription factor 23 75 - -
Trme7820g00001 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Trme7820g00001 250 SMART sant 22 72 IPR001005 -
Trme7820g00001 250 SMART sant 75 123 IPR001005 -
Trme7820g00001 250 ProSiteProfiles Myb-like domain profile. 22 70 IPR001005 -
Trme7820g00001 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Trme7820g00001 250 SUPERFAMILY Homeodomain-like 22 117 IPR009057 -
Trme7820g00001 250 CDD SANT 80 121 IPR001005 -
Trme7820g00001 250 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Trme7820g00001 250 Pfam Myb-like DNA-binding domain 76 120 IPR001005 -
Trme7820g00001 250 Gene3D - 80 124 - -
Trme7820g00001 250 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 216 IPR044676 GO:0003700|GO:0006355|GO:0043565
Trme7820g00001 250 FunFam MYB-related transcription factor 80 124 - -
Trme7820g00001 250 CDD SANT 25 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7820g00001 Trme-Chr7820 71 1623 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7820g00001 16 247 MYB Transcription Factor Family AT4G13480 58.400 2.79e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trme7820g00001 Myb_DNA-binding 3.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7820g00001 K09422 - gmx:100795981 383.259