Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme78196g00001 ATGTCTGAATCTGATGCATACCAAAGACAGTTACAACAACTTTTCAATCTTCATGATTCAGGTTTAGATCAAGCATTCATTGATGCTCTTCCTGTTTTTATATACAAAGAGATTATTGGTTTGAAAGAACCATTTGATTGTGCTGTTTGTTTATATACATGGTTGTTATCAAATTCATCTTGTCCTTTATGTAGAGGTACCCTTTATTCACAAGGGTTTTCTTTTGATAAAAATCATGTTTTTGAGTTCGAGGATCAAAGAGATGAAGATTATGTTTTAGGTATTGGTTCTGTTAACAAAGATATGGAAAATAACATTATGAATGGAAAAAGGGTTTTTTCTGTTAGGCTTGGAAAGTTTAAAAGCTCAAATAATGAAGGGGGTGTGGAAAGAAATGAAGATTTGCAAGTTGCTTTGAGAGGTTCTAAAGGTGATAGTATGAGACAATTGAAGGGAATTAGAGAAGTTTGTGATGGGAGATTTTCCAATGATGGTGATGTTGAAGGCAAAAAAATCAACATTGCAAGAAAAGGTGAAAGTTTTTCTGTTTCTAAGATATGGCAATGGTCTAAGAAAGATT 580 0.3259 MSESDAYQRQLQQLFNLHDSGLDQAFIDALPVFIYKEIIGLKEPFDCAVCLYTWLLSNSSCPLCRGTLYSQGFSFDKNHVFEFEDQRDEDYVLGIGSVNKDMENNIMNGKRVFSVRLGKFKSSNNEGGVERNEDLQVALRGSKGDSMRQLKGIREVCDGRFSNDGDVEGKKINIARKGESFSVSKIWQWSKKD 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme78196g00001 193 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 4 51 - -
Trme78196g00001 193 SUPERFAMILY RING/U-box 47 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme78196g00001 Trme-Chr78196 8 737 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme78196g00001 6 174 C3H Transcription Factor Family AT2G18650 34.343 5.15e-25 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme78196g00001 - - tpra:123906744 372.089