Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme78084g00001 ATGGCGGAACACTTAGCATCAATCTTCGGCACAGAGAAAGACAGAGTTAACTGTCCATTCTACTTCAAGATCGGCGCCTGCCGTCACGGCGACCGTTGTTCCCGTCTCCATAACCGTCCAACAATTTCCCCAACTCTCCTCCTCTCCAACATGTACCAACGTCCTGATATCATCACTCCCGGCGTCGATCCCAACGGTCAACCTATCGATCCGCGTCAGATCCAACAACACTTTGAAGATTTCTACGAAGATATTTTTCTAGAACTTTCCAAATTCGGTTACATCGAAACCCTAAACGTTTGTGATAATCTCGCTGATCATATGATCGGTAATGTTTACGTTCTGTTTCGTGAGGAAGATCATGCTGCTGCTGCTCTTGCTTCTCTTCATGGAAGATTTTACTCTGGGAGGCCGATTTTGGCTGATTTTTCTCCGGTGACGGATTTTCGTGAGGCGACTTGTCGGCAGTATGAGGAGAATAGTTGTAATCGTGGTGGTTATTGTAATTTTATGCATGTGAAGAA 524 0.4561 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDIITPGVDPNGQPIDPRQIQQHFEDFYEDIFLELSKFGYIETLNVCDNLADHMIGNVYVLFREEDHAAAALASLHGRFYSGRPILADFSPVTDFREATCRQYEENSCNRGGYCNFMHVK 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme78084g00001 174 FunFam Splicing factor U2AF small subunit 45 145 - -
Trme78084g00001 174 ProSiteProfiles Zinc finger C3H1-type profile. 148 174 IPR000571 GO:0046872
Trme78084g00001 174 Gene3D - 43 145 IPR012677 -
Trme78084g00001 174 SMART c3hfinal6 148 174 IPR000571 GO:0046872
Trme78084g00001 174 SMART c3hfinal6 13 39 IPR000571 GO:0046872
Trme78084g00001 174 SMART rrm2_1 72 142 IPR003954 GO:0003676
Trme78084g00001 174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 146 IPR000504 GO:0003723
Trme78084g00001 174 SUPERFAMILY RNA-binding domain, RBD 77 149 IPR035979 GO:0003676
Trme78084g00001 174 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 174 IPR009145 GO:0000398|GO:0003723|GO:0089701
Trme78084g00001 174 CDD RRM_U2AF35B 44 145 - -
Trme78084g00001 174 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 150 173 IPR000571 GO:0046872
Trme78084g00001 174 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 38 IPR000571 GO:0046872
Trme78084g00001 174 ProSiteProfiles Zinc finger C3H1-type profile. 12 40 IPR000571 GO:0046872
Trme78084g00001 174 PRINTS U2 auxiliary factor small subunit signature 37 57 IPR009145 GO:0000398|GO:0003723|GO:0089701
Trme78084g00001 174 PRINTS U2 auxiliary factor small subunit signature 75 90 IPR009145 GO:0000398|GO:0003723|GO:0089701
Trme78084g00001 174 PRINTS U2 auxiliary factor small subunit signature 18 37 IPR009145 GO:0000398|GO:0003723|GO:0089701
Trme78084g00001 174 PRINTS U2 auxiliary factor small subunit signature 103 125 IPR009145 GO:0000398|GO:0003723|GO:0089701
Trme78084g00001 174 PRINTS U2 auxiliary factor small subunit signature 130 154 IPR009145 GO:0000398|GO:0003723|GO:0089701
Trme78084g00001 174 PRINTS U2 auxiliary factor small subunit signature 165 174 IPR009145 GO:0000398|GO:0003723|GO:0089701
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme78084g00001 Trme-Chr78084 259 782 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme78084g00001 zf-CCCH 4.6e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme78084g00001 K12836 - ath:AT5G42820 343.969