Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme78030g00001 ATGAACATGTGTTCTAAGTGTTACAAGGACACATTGTTGAAGCAGGAGCAAGACAAACTTGCAGCGACATCAGTTGAAAACATTGTGAACGGCAATTCCAGTAGCAACGGAAAGCTGGCCGTGACTACAGCTGCTGTCGATGTACAAGTTGGAACTGTGGAGGTCAATACAGCGTGTCCTGAGGTTCCCGAAAATTCAATCTTTGGTGAAAGTGTGGAGGTGAAAGCCAAGACTGGTCCCAGCAGATGTACTACTTGCCGGAAACGTGTTGGATTAACTGGTTTCAGCTGCAAATGTGGCAACCTCTTTTGTTCAATGCATCGCTATTCTGATAAACATGATTGCCCTTT 350 0.4514 MNMCSKCYKDTLLKQEQDKLAATSVENIVNGNSSSNGKLAVTTAAVDVQVGTVEVNTACPEVPENSIFGESVEVKAKTGPSRCTTCRKRVGLTGFSCKCGNLFCSMHRYSDKHDCP 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme78030g00001 116 ProSiteProfiles Zinc finger AN1-type profile. 77 116 IPR000058 GO:0008270
Trme78030g00001 116 Gene3D - 1 36 - -
Trme78030g00001 116 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 116 - -
Trme78030g00001 116 Gene3D - 64 116 IPR035896 -
Trme78030g00001 116 Pfam AN1-like Zinc finger 83 116 IPR000058 GO:0008270
Trme78030g00001 116 SUPERFAMILY AN1-like Zinc finger 66 115 IPR035896 -
Trme78030g00001 116 SMART AN1_Zf_4 83 116 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme78030g00001 Trme-Chr78030 1 350 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme78030g00001 1 115 C2H2 Transcription Factor Family AT3G52800 38.136 1.63e-16 69.3