Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme78025g00001 TGTGATGAACGAATCCAGAAGATTCAGACAGTCAAAGTGATGGAAGGAATCCTAGTATGTGCAGCTCCTCATTGTCTCAAGACATTCTTCAAGAGAGCTGAATTTGAATCTCATATCCATGAATACCACGCTGATCTTATTCCCTCCAATCCAGATAAAGAAGACGGAAATGAGTCAGAGGCACAAAGTGTTAGACAACCTACAGCCTCAGACTCCACTGCTCGAGGCCCCCAAAGGCAAGTTTTTTCACCAGGTTCAAATTCTCAACCCCATGATCTGGAAGAGAGAACCCGTCGGCAACCAGTAAGAGATCAAACTCCTTCAAGGCCAACAATGCAGCAAAAGCCACCATTTTTC 357 0.4482 CDERIQKIQTVKVMEGILVCAAPHCLKTFFKRAEFESHIHEYHADLIPSNPDKEDGNESEAQSVRQPTASDSTARGPQRQVFSPGSNSQPHDLEERTRRQPVRDQTPSRPTMQQKPPFF 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme78025g00001 119 MobiDBLite consensus disorder prediction 45 119 - -
Trme78025g00001 119 MobiDBLite consensus disorder prediction 45 60 - -
Trme78025g00001 119 ProSiteProfiles Zinc finger C2H2 type domain profile. 18 48 IPR013087 -
Trme78025g00001 119 ProSitePatterns Zinc finger C2H2 type domain signature. 20 43 IPR013087 -
Trme78025g00001 119 MobiDBLite consensus disorder prediction 61 90 - -
Trme78025g00001 119 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 118 IPR040383 GO:0016567|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme78025g00001 Trme-Chr78025 426 782 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme78025g00001 1 79 C2H2 Transcription Factor Family AT5G01160 57.500 7.22e-30 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme78025g00001 K15685 - gmx:100817582 192.971