Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7797g00001 ATGCTGCAGGTTGCAGAATCTCATGCTAATTCTCTAGTTTCTGTGAAACCTAAAAAACCTTCTTTAAAGGAAAGGAAGCACAAGTTACTTACCTTCTTGAAAGAGAGGTATGAACCTGTCTATGCTAAGTGGACTACGGAGCGGTGTGCTGTTTGTAGATGGGTCGAAGACTGGGACTATAATAAAATTATCATTTGCAACAGATGTCAAATAGCTGTTCACCAAGAATGCTATGGAGCAAAAAATGTTAAAGACTTTACATCTTGGGTCTGTAAGGCCTGTGAAACACCTGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTTAAGCCAACCGATATTCACACATTATGGGTTCATGTCACCTGTGCTTGGTTTCGACCTGAAGTCTCGTTTGCTAGTGATGAGAAGATGGAACCTGCTTTGGGTCTACATTATTTGAATTTCAGATTTGTGTTATTTGCAAGCAAATCCATGGTTCCTGCACACAGTGTTGCAAATGTTCCACTTATTTCCATGCCATGTGCGCATCAAGGGCCGGTTACCGAATGGAGGTGA 570 0.4211 MLQVAESHANSLVSVKPKKPSLKERKHKLLTFLKERYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGAKNVKDFTSWVCKACETPDIKRECCLCPVKGGALKPTDIHTLWVHVTCAWFRPEVSFASDEKMEPALGLHYLNFRFVLFASKSMVPAHSVANVPLISMPCAHQGPVTEWR 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7797g00001 189 ProSiteProfiles Zinc finger PHD-type profile. 46 97 IPR019787 -
Trme7797g00001 189 SMART PHD_3 48 95 IPR001965 -
Trme7797g00001 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 163 IPR013083 -
Trme7797g00001 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 95 IPR013083 -
Trme7797g00001 189 FunFam Histone-lysine N-methyltransferase 36 97 - -
Trme7797g00001 189 ProSitePatterns Zinc finger PHD-type signature. 49 94 IPR019786 -
Trme7797g00001 189 PANTHER PHD FINGER PROTEINS 28 151 - -
Trme7797g00001 189 Pfam PHD-finger 61 95 - -
Trme7797g00001 189 SUPERFAMILY FYVE/PHD zinc finger 47 111 IPR011011 -
Trme7797g00001 189 CDD PHD_ATX3_4_5_like 48 94 IPR042011 -
Trme7797g00001 189 ProSiteProfiles Extended PHD (ePHD) domain profile. 100 149 IPR034732 -
Trme7797g00001 189 Pfam PHD-zinc-finger like domain 102 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7797g00001 Trme-Chr7797 508 1708 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7797g00001 49 143 C2H2 Transcription Factor Family AT3G14740 41.000 4.73e-17 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trme7797g00001 zf-HC5HC2H_2 4.1e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7797g00001 - - aprc:113853254 302.753