LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme7790g00001	CCTCCTCCTCAAGCGGGGGAGGTTGTGGGGAGTTTTGGTGAGGAAGGTGAGGGTGAATCTGATGAGTGTTTTTTGGCATTTGCTAGGATATTTAGTGGTGTTTTATCTGTCGGGCAGAGAGTTTTTGTGATTTCGGCTTTGTATGATCCTTTGAAAGGGGAATCAACACAAAAGCATATACAGGAGGCTGAATTGAAATCCATGTATTTGATGATGGGCCAAGGGTTGAAAGTAGTGAAATCCGCGAAAGCAGGAGATGTTGTTGCAATCCGAGGGCTTGGCCAGTATATTTTGAAAAGTGCTACACTTTCTTCTACCAGGAACTGTTGGCCTTTTTCGAGTATGGCGTTTCAAGTTGCCCCGATTTTGAGGGTTGCTATTGAGCCATCTGACCCTGCAGATATGGGTGCGCTGCTCAAAGGCTTGAGGCTTTTGAATCGAGCGGATCCGTTTGTTGAGGTCACAGTTTCTGCAAGAGGAGAGCATGTTCTTGCTGCAGCTGGTGAAGTTCATCTTGAGAGATGCATAAAGGATTTGAAGGATAGGTTTGCAAAAGTAAGCTTGGAAGTCTCTCCACCCCTTGTGTCCTACAAAGAGACCATTGAGGGAGAGGTATCCAACATGCTGGAAAATTTGAAAGTTCTTAGCAAGAACTTAGATTATGTTGAGAAAACGACGCCCAATGGAAGATGCATTGTACGCGTACAGGTGATGAAACTTTTACCTTCTCTCACAAAGGTTCTTGATGAAAGCGCTGATATACTTGGAGATATCATTGGAATAATGTCAGGGCAGACAGTTAAAAGTTTAGAAACTCAGGGGACAAATATTCTCGAAATTGGGAATCCAGCTGAAGTGATTAAAAAACGTATAATGGATGCAATTGAGAGTGACATTTTGTGTAGGATTGAGAATGATGAAGACCATGCCGAGAAATGTAGATTGAAGTGGTTAAAGCTTTTGAGGAGGATATGGGCACTTGGTCCGAGTTACATCGGCGCTAACGTTCTCTTTACTCCTGATATTAAAGCAGAGAGTAGTGATAGCTCTGTTCTAATACGTGGTTTTTCTCAACTATCTGAAAGGTTGGGTTTTGTGGCTGATTCCGGTAACAGTAACTCAGTTTCAGAGGCATCTTCAAATGAGAGCCAAGTGTTGTATATGGATGCCAAGCGTCTTGAGAGTAATGTTATAACCGGGTTCCAACTAGCAACTTCAGCTGGGCCTTTATGCGATGAACCTATGTGGGGTCTGGCATTTGTCATTGAGGCACGAATAACTCCATCTACAGGACATGATGAATCTGAAACACACCAACAATCCGACCAGTATGGCATCTTTGCAGGGCAGGTTATTGCAACCGTCAAAGATGCCTGTAGGACAGCTGTGCTAAAGAATAAGCCAAGGCTTGTGGAAGCAATGTACTTCTGTGAATTGAATACCCCTACTGAATTTTTGGGTCCCATGTATGGTGTACTTTCCCGTAGACGGGCTCGAATTTTGAAAGAAGAGATGCAGGAAGGTTCCCCTTTATTCACTGTGCATGCATATGTTCCTGTTTCTGAGAGCTTTGGTTTTACTGATGAGCTTAGAAGTAGGACTTCTGGCGCTGCGAGTGCAATTCTTGTCCTTAGCCACTGGGAAGCACTACTCGAGGATCCTTTCTTTGTACCTAAAACAGAAGAGGAAATCGAAGAGTTTGGAGATGGTTCCAGCGTTCTTCCAAATACAGCAAGAAAGTTGATTGACACAGTCAGACGGCGGAAGGGCCTTCATGTCGAGGAAAAGGTAGTACAACACGGAACAAAGCAGAGGACACTCGCTCGGAAAGTTTGA	1836	0.4406	PPPQAGEVVGSFGEEGEGESDECFLAFARIFSGVLSVGQRVFVISALYDPLKGESTQKHIQEAELKSMYLMMGQGLKVVKSAKAGDVVAIRGLGQYILKSATLSSTRNCWPFSSMAFQVAPILRVAIEPSDPADMGALLKGLRLLNRADPFVEVTVSARGEHVLAAAGEVHLERCIKDLKDRFAKVSLEVSPPLVSYKETIEGEVSNMLENLKVLSKNLDYVEKTTPNGRCIVRVQVMKLLPSLTKVLDESADILGDIIGIMSGQTVKSLETQGTNILEIGNPAEVIKKRIMDAIESDILCRIENDEDHAEKCRLKWLKLLRRIWALGPSYIGANVLFTPDIKAESSDSSVLIRGFSQLSERLGFVADSGNSNSVSEASSNESQVLYMDAKRLESNVITGFQLATSAGPLCDEPMWGLAFVIEARITPSTGHDESETHQQSDQYGIFAGQVIATVKDACRTAVLKNKPRLVEAMYFCELNTPTEFLGPMYGVLSRRRARILKEEMQEGSPLFTVHAYVPVSESFGFTDELRSRTSGAASAILVLSHWEALLEDPFFVPKTEEEIEEFGDGSSVLPNTARKLIDTVRRRKGLHVEEKVVQHGTKQRTLARKV	611

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme7790g00001	611	Pfam	Elongation factor G C-terminus	470	550	IPR000640	-
	Trme7790g00001	611	Gene3D	-	468	602	-	-
	Trme7790g00001	611	Coils	Coil	198	218	-	-
	Trme7790g00001	611	SMART	EFG_C_a	469	558	IPR000640	-
	Trme7790g00001	611	FunFam	Elongation factor like GTPase 1	468	603	-	-
	Trme7790g00001	611	CDD	aeEF2_snRNP_like_IV	192	476	-	-
	Trme7790g00001	611	CDD	EF2_snRNP_III	121	192	-	-
	Trme7790g00001	611	Gene3D	-	217	466	IPR014721	-
	Trme7790g00001	611	CDD	EF2_II	21	106	-	-
	Trme7790g00001	611	PANTHER	TRANSLATION ELONGATION FACTOR-RELATED	21	610	-	-
	Trme7790g00001	611	SUPERFAMILY	Translation proteins	22	115	IPR009000	-
	Trme7790g00001	611	SUPERFAMILY	EF-G C-terminal domain-like	472	570	IPR035647	-
	Trme7790g00001	611	Pfam	Elongation factor Tu domain 2	25	103	IPR004161	GO:0005525
	Trme7790g00001	611	CDD	eEF2_snRNP_like_C	472	550	-	-
	Trme7790g00001	611	SUPERFAMILY	EF-G C-terminal domain-like	119	193	IPR035647	-
	Trme7790g00001	611	SUPERFAMILY	Ribosomal protein S5 domain 2-like	195	471	IPR020568	-
	Trme7790g00001	611	Gene3D	Elongation Factor G (Translational Gtpase), domain 3	120	196	-	-
	Trme7790g00001	611	FunFam	Translation elongation factor 2	120	196	-	-
	Trme7790g00001	611	Gene3D	Translation factors	5	118	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme7790g00001	Trme-Chr7790	2	1837	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme7790g00001	14	611	Eukaryotic Initiation Factors Gene Family	AT3G22980	67.500	0.0	811

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme7790g00001	K14536		-	pvu:PHAVU_003G003900g	986.867