Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7784g00001 GACGGTTATGCGATAAAGGACACCCATATAAGCTTTGATAATCAGCAATACCAAGACATGATTTCTTGTCCTATTTATATCGCACAATTTGATGAAGATGTGGTTCAATCTAACCTTGTATTCTGCACCAAACTGTCTCAACGAGTTTCGCCCCTTATTCTTTCGCAAGAATCTCTATATGAGATACGACTAAATTCAATCACATTGTCTTGGTCAGAAACAAATCTTGACAAAGGATGCTTCAAATGCAAGCACAAATCAAAGAAGAAGATTATTTTAACCTCTGCAGGTGTAGTCATTGGCTCAACTATGCTTGTTCTTATATTTGCCATTTTCCAAATATATGGCTATTTTAAGATGAAAGATGAAGATTATGAAAGAATTGAAAACTTTTTGAAGGATTACAGAGCTTTAAAGCCAACTAGGTTCTCTTATGCAGACTTAAAGAGAATTACACATAATTTTACAGATAAGTTAGGTGAAGGGGCTCATGGTGCTGTTTATAAAGGTAAATTGTCGAACCAAATTTTGGTTGCTGTGAAGATTCTTAATAATGCAGAGGGTGACGGGAACGAGTTCATAAATGAAGTGGGAACTATGGGCAAAATTCACCATCTCAACGTAGTTCGTTTGCTTGGCTTCTGCGCAGACGGATTTCGTCGTGCTTTAGTGTATGACTTTTTTCCAAATGGTTCATTGGAGAAATTCATTTCTCCTTCGAACAACAAAGATAATTTCCTTGGATGGGATAAGTTAGAACAAATTGCTCTAGGCATAGCTAATGGCATTGAGTATCTCCACCAAGGTTGTGATCAAAGAATTCTACACTTTGACATCAATCCT 843 0.3665 DGYAIKDTHISFDNQQYQDMISCPIYIAQFDEDVVQSNLVFCTKLSQRVSPLILSQESLYEIRLNSITLSWSETNLDKGCFKCKHKSKKKIILTSAGVVIGSTMLVLIFAIFQIYGYFKMKDEDYERIENFLKDYRALKPTRFSYADLKRITHNFTDKLGEGAHGAVYKGKLSNQILVAVKILNNAEGDGNEFINEVGTMGKIHHLNVVRLLGFCADGFRRALVYDFFPNGSLEKFISPSNNKDNFLGWDKLEQIALGIANGIEYLHQGCDQRILHFDINP 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7784g00001 281 PANTHER OS07G0415500 PROTEIN 73 281 - -
Trme7784g00001 281 FunFam serine/threonine-protein kinase PBS1-like 120 227 - -
Trme7784g00001 281 SMART tyrkin_6 153 279 IPR020635 GO:0004713|GO:0006468
Trme7784g00001 281 ProSitePatterns Protein kinases ATP-binding region signature. 159 181 IPR017441 GO:0005524
Trme7784g00001 281 Gene3D Phosphorylase Kinase; domain 1 126 227 - -
Trme7784g00001 281 ProSiteProfiles Protein kinase domain profile. 153 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme7784g00001 281 SUPERFAMILY Protein kinase-like (PK-like) 135 281 IPR011009 -
Trme7784g00001 281 Pfam Protein tyrosine and serine/threonine kinase 155 278 IPR001245 GO:0004672|GO:0006468
Trme7784g00001 281 Gene3D Transferase(Phosphotransferase) domain 1 228 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7784g00001 Trme-Chr7784 893 1866 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7784g00001 119 281 Receptor kinase-like Gene Family AT1G66910 46.341 1.26e-45 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme7784g00001 PK_Tyr_Ser-Thr 2.5e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7784g00001 - - tpra:123893290 361.688