Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme77805g00001 GCAATGGAAGAAGCAAACGACACAAGGAGGGAATTGAAGGAAAAACATAATGGAGGACCATGTGAATCAAGCAACCCAATTGATAATTGTTGGAGGTGCAAAGCAGATTGGGCTGAAAATAGATTTCGATTAGCAAAATGTGGTAAGGGCTTTGGAAGAAAGGCCGTTGGTGGGCTTGGAGGCCCAATTTATGTGGTAACTGATGAGTCAGATAATGACATGGTAAACCCAAAACCTGGTACACTTAGATATGGTGCTGTCCAAAAAGGACCATTGTGGATAACATTCCAACGTAGTATGATCATTAGATTGAACCAAGAATTGATGGTTTCTTCTAACAAGACAATTGATGGTCGTGGAGTTAATGTTCAAATTAGGGATGGTGGTGGAATTACTATGCAATTTGTTAATAATGTTATTATTCATGGTCTTCATATTACAAATATTAAAGCTAAACCAGGTGGTATGATTAGGGATTCTTTTGATCATGTTGGACTAAGAACAAGGAGTGATGGTGATGCTATTTCTATTTTTGGATCTTCTAATATTTGGATTGATCATCTTTCACTCTCTCAATGTGAGGATGGTCTTGTTGATGTTATTCAAGGTTCTACCGGCATCACCATCTCAAATAATCACATGACAAAACATAATGATGTGAGTAATTTTAGTTTTTTTTAA 681 0.3671 AMEEANDTRRELKEKHNGGPCESSNPIDNCWRCKADWAENRFRLAKCGKGFGRKAVGGLGGPIYVVTDESDNDMVNPKPGTLRYGAVQKGPLWITFQRSMIIRLNQELMVSSNKTIDGRGVNVQIRDGGGITMQFVNNVIIHGLHITNIKAKPGGMIRDSFDHVGLRTRSDGDAISIFGSSNIWIDHLSLSQCEDGLVDVIQGSTGITISNNHMTKHNDVSNFSFF 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme77805g00001 226 SMART amb_all 99 226 IPR002022 -
Trme77805g00001 226 PRINTS Pollen allergen Amb family signature 171 192 IPR018082 -
Trme77805g00001 226 PRINTS Pollen allergen Amb family signature 71 96 IPR018082 -
Trme77805g00001 226 PRINTS Pollen allergen Amb family signature 47 64 IPR018082 -
Trme77805g00001 226 PRINTS Pollen allergen Amb family signature 107 123 IPR018082 -
Trme77805g00001 226 MobiDBLite consensus disorder prediction 1 18 - -
Trme77805g00001 226 MobiDBLite consensus disorder prediction 1 23 - -
Trme77805g00001 226 Gene3D - 24 224 IPR012334 -
Trme77805g00001 226 SUPERFAMILY Pectin lyase-like 19 222 IPR011050 -
Trme77805g00001 226 PANTHER PECTATE LYASE 18-RELATED 4 221 IPR045032 GO:0030570
Trme77805g00001 226 Pfam Pectate lyase 107 220 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme77805g00001 Trme-Chr77805 60 740 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme77805g00001 5 220 Polysaccharide Lyase AT5G15110 62.162 9.11e-101 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme77805g00001 K01728 - gmx:100785801 346.665