Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme77743g00001 ATGGTTGGAACATATGGTTACATGCCTCCAGAGTATGCTGTACATGGTCGTTACTACATGAAATCGGATGTGTTTAGTTTTGGCGTAATAGTATTGGAGATAATCAGTGGGAATAAGATTAAGCGATTTTATGACTCAGAACACTCTCTCAACCTTCTTGGACAT 165 0.3879 MVGTYGYMPPEYAVHGRYYMKSDVFSFGVIVLEIISGNKIKRFYDSEHSLNLLGH 55
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme77743g00001 55 Gene3D Transferase(Phosphotransferase) domain 1 1 54 - -
Trme77743g00001 55 ProSiteProfiles Protein kinase domain profile. 1 55 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme77743g00001 55 Pfam Protein tyrosine and serine/threonine kinase 6 38 IPR001245 GO:0004672|GO:0006468
Trme77743g00001 55 SUPERFAMILY Protein kinase-like (PK-like) 1 40 IPR011009 -
Trme77743g00001 55 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme77743g00001 Trme-Chr77743 168 415 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme77743g00001 1 55 Receptor kinase-like Gene Family AT4G23230 58.182 2.23e-19 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme77743g00001 PK_Tyr_Ser-Thr 1.9e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme77743g00001 - - vvo:131659752 95.1301