Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme776881g00001 ATGCTTGGGAAGGGTAGTTTGGGAACTGTTTATAGGGCTGTTCTTGATGATGGATGTACTGTTGCTGTTAAGAGACTTAAGGATGCTAACCCTTGTGATAGGAACCAGTTTGAACAGTATATGGATGTTGTGGGGAAGCTTAGACACCCTAATGTTGCTAGACTTAAA 168 0.4167 MLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCDRNQFEQYMDVVGKLRHPNVARLK 56
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme776881g00001 56 Gene3D Phosphorylase Kinase; domain 1 1 56 - -
Trme776881g00001 56 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 1 55 IPR046959 -
Trme776881g00001 56 Pfam Protein tyrosine and serine/threonine kinase 2 55 IPR001245 GO:0004672|GO:0006468
Trme776881g00001 56 ProSiteProfiles Protein kinase domain profile. 1 56 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme776881g00001 56 SUPERFAMILY Protein kinase-like (PK-like) 1 55 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme776881g00001 Trme-Chr776881 1 168 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme776881g00001 1 56 Receptor kinase-like Gene Family AT2G36570 73.684 2.95e-25 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme776881g00001 PK_Tyr_Ser-Thr 3.3e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme776881g00001 - - ccaj:109796875 111.309