Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme77620g00001 TTACCCTCTCCTTCTAAGATTGAAACGGCTTCTTGTGGTCATCCGTTCTGTTTTTCATGCTGGGGAGGATATATTGGGACTTCAATTGGCGATGATCCGGGATGCTTGATGTTGAGATGTCCTGATCCCGCTTGTGGTGCTGCTGTTGATCWAGATATGATTAATCTTTTAGCATCTGGTGAAGATAAAGAAAAGTATGATCGTTACCTTCTCAGATCATACTTAGTGACAGATGCAAAAAAAGCTGTTGCTGATCATTAA 261 0.41 LPSPSKIETASCGHPFCFSCWGGYIGTSIGDDPGCLMLRCPDPACGAAVDXDMINLLASGEDKEKYDRYLLRSYLVTDAKKAVADH 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme77620g00001 86 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 12 75 IPR031127 GO:0004842|GO:0016567
Trme77620g00001 86 FunFam RBR-type E3 ubiquitin transferase 2 78 - -
Trme77620g00001 86 SUPERFAMILY RING/U-box 8 75 - -
Trme77620g00001 86 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 76 IPR013083 -
Trme77620g00001 86 ProSiteProfiles TRIAD supradomain profile. 1 86 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme77620g00001 Trme-Chr77620 452 712 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme77620g00001 4 80 C3H Transcription Factor Family AT2G31510 63.636 2.12e-31 112