Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7759g00001 CCACTTGATGAACTTAGAACTCTTTGTTTCGGTTCGAATCCTCGGAGAGGTTCAAAGTTAATTTTGAAGGATGTAAATTGTGAGGCAAGGCCGGGGGAGGTTACTGCTATTGCCGGTCCTAGTGGAGCTGGAAAAACAACACTGCTTGAAATTCTTGCTGGGAGAATACCCTCATGTAAAGTTTCGGGACAAGTACTTGTCAATCACATGCCTATGGATGTAAACAGATTCAGAAGAGAATCCGGCTACGTCACGCAAGAAGATGCTTTGTTTCCATCGCTTACGGTTAGAGAGACGCTCATGTATAGTGCTTTGTTGAGGCTTCCCGGGGGACGAAAAGCAGCTGCTATGAGAGTTGCAGAGTTGATGAAGGAGCTCGGGTTGGATACTATTGCAGATTCAAGAATTGGCAATGGATCAGACCATGGTATATCGGGCGGGGAAAAGCGTAGAGTTTCTATTGGTGTTGACTTGGTTCATGACCCTGCAATTATTTTGATTGATGAACCAACTTCAGGCTTGGATTCAGCATCAGCTCTTAAAGTAATCTCATTGCTTAGATTAATGGCATTTAATCAAGGTAAGACGGTTGTTTTAACTATCCATCAACCCGGGTTCCGAATCCTAGAGCTACTTGATAGCCTCGTTTTGCTATCTGATGGATTTGTCACGCATAATGGTTCGTTGAATCTACTCGAGGCAAGGCTCAATTTATCCGGTCATCGCATTCCCAACCATGTCAATGTCCTAGAATTCGCTCTTGAAGCCATGCAAACCTTGGTTATACATACTTCAGAATCTGGGAACAATCAATTTCTTCTCAATGACAAAAATCACCAAGATCACAATATGATGATGCAGTGCTCTATGATTGTCAAAGAAAAGGCTATTTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNAAGATTTTGCAGCAACATATTCAGAACCAAGCAACTCTTTGTTACAAGGGTCATACAGGCCTTAGTAGCTGGATTTGTATTGGGGACCATATTCTTGAATGTTGGCAACAAACAAAGTAAAATAGCATTACAAACGCGAAGCGGCTTCTTCGCTTTCAGCCTTACCTTTTTGTTATCATCAACAACAGAAGGGTTACCTATTTTCTTAGAGGAGAGAAGAACTTTTATGAGAGAGACCTCAAGAGGAGCTTATAGAGTTTCTTCATATGTTTTAGCAAATACACTTGTGTTTCTTCCTTTTCTTCTAATGGTTGGTCTTCTATATACTACTCCAGTTTATTGGCTGGTAGGATTAAGGAAAGACATTGATGGTTTCCTTTACTTCTCCTTAGTGGTTTGGTTGGTCCTATTAATGTCGAATTCTCTCGTGGCTTGTTTCAGCGCCCTAGTGCCGAATTTCATCCTTGGAAGCTCGGTGATTGCCGGTCTAATGGGGTCATTCTTTCTGTTCTCAGGGTATTTCATATCAAAGGAAAAAATACCTAGTTACTGGATTTTTATGCACTACATAAGTCTATTCAAGTATCCATTTGAGTGCCTTATGATAAATGAGTATGGAGGCGAGCAAGGGAAAAGGAGATGCATAGAGGTTAACAACAATGGTGAATGCATATTATATGGAGCTGAGTTCTTAAAACAACAGGGTCTCAAAGAGTCACACAAGTGGATCAATTTGGCTTTAATGTTAAGCTTCATAATAGGGTATAGAGTGCTTAACTTTATAATTCTTTGGTCTAGATGTTACAAAAGTAGAAAATAA 1755 0.3937 PLDELRTLCFGSNPRRGSKLILKDVNCEARPGEVTAIAGPSGAGKTTLLEILAGRIPSCKVSGQVLVNHMPMDVNRFRRESGYVTQEDALFPSLTVRETLMYSALLRLPGGRKAAAMRVAELMKELGLDTIADSRIGNGSDHGISGGEKRRVSIGVDLVHDPAIILIDEPTSGLDSASALKVISLLRLMAFNQGKTVVLTIHQPGFRILELLDSLVLLSDGFVTHNGSLNLLEARLNLSGHRIPNHVNVLEFALEAMQTLVIHTSESGNNQFLLNDKNHQDHNMMMQCSMIVKEKAIXXXXXXXXXXXXXXXRFCSNIFRTKQLFVTRVIQALVAGFVLGTIFLNVGNKQSKIALQTRSGFFAFSLTFLLSSTTEGLPIFLEERRTFMRETSRGAYRVSSYVLANTLVFLPFLLMVGLLYTTPVYWLVGLRKDIDGFLYFSLVVWLVLLMSNSLVACFSALVPNFILGSSVIAGLMGSFFLFSGYFISKEKIPSYWIFMHYISLFKYPFECLMINEYGGEQGKRRCIEVNNNGECILYGAEFLKQQGLKESHKWINLALMLSFIIGYRVLNFIILWSRCYKSRK 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7759g00001 584 Coils Coil 313 313 - -
Trme7759g00001 584 SMART AAA_5 31 222 IPR003593 GO:0016887
Trme7759g00001 584 ProSitePatterns ABC transporters family signature. 144 158 IPR017871 GO:0005524|GO:0016887
Trme7759g00001 584 Gene3D - 13 241 IPR027417 -
Trme7759g00001 584 Coils Coil 293 297 - -
Trme7759g00001 584 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 235 IPR027417 -
Trme7759g00001 584 Pfam ABC transporter 22 172 IPR003439 GO:0005524
Trme7759g00001 584 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 21 569 - -
Trme7759g00001 584 FunFam ABC transporter G family member 10 6 251 - -
Trme7759g00001 584 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 5 245 IPR003439 GO:0005524
Trme7759g00001 584 Pfam ABC-2 type transporter 313 517 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7759g00001 Trme-Chr7759 83 1837 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7759g00001 2 232 Calmodulin-binding Proteins AT2G36910 30.252 9.20e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7759g00001 K05681 - gmx:100776372 953.74