Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme77587g00001 TTCTCGTTTAAATTTGGGTGGAAATCTTCTAAACAATCAGTTGGAACTCCGATTAAGAAGTTATTAGCCGAAGAGATGTCACCGGTGACTGAATCCAAAAGAAGATCCCCGGGTGTTATAGCTAGATTGATGGGGCTTGATGGCCTTCCATCACANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNAAAACTCGAAACAGAGGAACAGTAAATGAAGGCCGGTCGTCTAGGAGAAGCTCAAGGGATCAGGAAGAATTTAAGGATGTATTTGAGGTCTCAGAGATCCCGAAGGTAGAGAGCGGTAGGTATTCATCTTCAAACTTGAAGGTCAATGAAGATGAAATGTCATTTATTGAGCAGAAGTTCATGGATGCCAAACGCCTTGCGACTTATCAGGATTTTCAGTCTTCAAAGGATTTCCATGATACACTTGAGGTTTTGGACTCTAACAAGGATCTTCTGCTAAAGTACTTGAAGCGGCCAGATTCTTTGTTTAAAAAGCATTTGAATGATCTGCAAGATACCCCTTTCCAATCACATTCCAGTCATGTAGAATCAACTAATATGGAGAACTTTGAACATGATTTCAATTGGAGATCAGATAGGGAGACAACACAGGTGAATTACAATAGGTTTCATCAGAAGCAGC 670 0.3746 FSFKFGWKSSKQSVGTPIKKLLAEEMSPVTESKRRSPGVIARLMGLDGLPSXXXXXXXXXXXXXXXXXXKTRNRGTVNEGRSSRRSSRDQEEFKDVFEVSEIPKVESGRYSSSNLKVNEDEMSFIEQKFMDAKRLATYQDFQSSKDFHDTLEVLDSNKDLLLKYLKRPDSLFKKHLNDLQDTPFQSHSSHVESTNMENFEHDFNWRSDRETTQVNYNRFHQKQ 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme77587g00001 223 Coils Coil 70 74 - -
Trme77587g00001 223 PANTHER AFADIN 3 222 - -
Trme77587g00001 223 Pfam Protein of unknown function (DUF3741) 126 170 IPR022212 -
Trme77587g00001 223 MobiDBLite consensus disorder prediction 63 90 - -
Trme77587g00001 223 Pfam DUF761-associated sequence motif 32 52 IPR032795 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme77587g00001 Trme-Chr77587 116 785 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme77587g00001 14 198 TRM (TON1 Recruiting Motif) Superfamily AT3G53540 46.032 4.81e-41 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme77587g00001 - - vum:124823519 287.73