Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme77556g00001 ATGGCAGAACCAACAAACGTTCGATCAATGTCGTTCGTTGGGACACACGAATATCTTGCACCGGAAATTGTACGTGGTGAAGGACACGGTAGTGCTGTTGATTGGTGGACATTTGGGATATTTTTATACGAGCTTTTAACCGGAACAACGCCGTTTAAAGGTAACGGAAACCGTGCTACGCTTTTCAATGTTGTAGGACAACCTTTAAAGTTTCCAGACTATCCTTCTTGTAGTCCTATTGCTAGAGATCTTATTAAAGGATTGTTGGTTAAAGAACCTCAAAAAAGATTTGCTTATAAAAGAGGTGCTACTGAGATTAAACAACACCCATTTTTCGAAGGGGTTAATTGGGCTTTGATTCGAAGTGCTACTCCTCCTATTATACCAGAACCATTTGATTTTAGTCAGTATGTTAGTAAGGAAACTGTTGTAGCTGCTGTTGCTGATAACAAGATTGTTGATATTGTGAGTGATAAAAATAATAGTAAGGTGCAACATGATTCTTCTTATGAAGATTTTGAGTATTTTTAG 531 0.3766 MAEPTNVRSMSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLTGTTPFKGNGNRATLFNVVGQPLKFPDYPSCSPIARDLIKGLLVKEPQKRFAYKRGATEIKQHPFFEGVNWALIRSATPPIIPEPFDFSQYVSKETVVAAVADNKIVDIVSDKNNSKVQHDSSYEDFEYF 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme77556g00001 176 ProSiteProfiles Protein kinase domain profile. 1 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme77556g00001 176 SMART serkin_6 1 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme77556g00001 176 FunFam Serine/threonine-protein kinase AGC1-7 5 130 - -
Trme77556g00001 176 PANTHER FLIPPASE KINASE 1-RELATED 1 139 - -
Trme77556g00001 176 SUPERFAMILY Protein kinase-like (PK-like) 7 143 IPR011009 -
Trme77556g00001 176 Gene3D Transferase(Phosphotransferase) domain 1 8 130 - -
Trme77556g00001 176 Pfam Protein kinase domain 9 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme77556g00001 Trme-Chr77556 133 663 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme77556g00001 1 176 AGC Kinase Gene Family AT1G79250 68.229 1.66e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trme77556g00001 Pkinase 2.5e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme77556g00001 - - vvo:131616903 306.605