Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7747g00001 ATGTTACCTGTGTTTCTTGTCATTCTTATGTTTCCTGATCAGTGTCTGTTGGTTCCAAATGTTGTTCCAAGTGAAACTCTTCCTGAGAGACCTGGAGAACCAGATTGTCCATTCTTTCTGAAAACTCAAAAATGCAAGTTTGGTTCAAGGTGCAAATTTAATCATCCAAATGTTCCATCAGAAAATCCTGATGTTTCAGGCTTACCCGAGAGGCCACAAGAGCCCCCTTGTGCGTTTTATTTGAAAACTGGAAAATGTAAATATGGTGCTGCGTGCAAATTCCATCACCCCAAGGATATCCAGATCCAGTTTTCTGATGAATCGAGCCGTACCGTTGAGCAGACACAAACAAATTCTTCTATGTTTGACGGGGCAATAGGAGATGCACAACAAACTAAGCCTCTTATATCTCCACTGTTGCATAATAGCAAAGGGCTTCCTGTGAGACTGGGGGAAGTGGATTGTCCGTTCTACATGAAAACTGGAAGTTGCAAGTTCGGTGCCAGTTGCCGCTACAATCATCCTGACATGAATGCAATTAATCCACCTATTTCTGCATTGGCCCCTTCTCTTTTGGGATCCTCGGCTGCTAATCATAACATTGGAGTTATTAATCCAGCTGCATCTTTTTATCAAGCTTTTGACCCCAGGATCTCAAATCCAATGACCCAGGTGGGAGTAACAGGGACTATCTATCCTCAGCGTCCTGGACAGATTGAATGTGAT 726 0.4311 MLPVFLVILMFPDQCLLVPNVVPSETLPERPGEPDCPFFLKTQKCKFGSRCKFNHPNVPSENPDVSGLPERPQEPPCAFYLKTGKCKYGAACKFHHPKDIQIQFSDESSRTVEQTQTNSSMFDGAIGDAQQTKPLISPLLHNSKGLPVRLGEVDCPFYMKTGSCKFGASCRYNHPDMNAINPPISALAPSLLGSSAANHNIGVINPAASFYQAFDPRISNPMTQVGVTGTIYPQRPGQIECD 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7747g00001 242 Gene3D - 64 109 - -
Trme7747g00001 242 Gene3D - 19 63 - -
Trme7747g00001 242 Gene3D - 114 182 - -
Trme7747g00001 242 SUPERFAMILY CCCH zinc finger 153 176 IPR036855 GO:0046872
Trme7747g00001 242 SUPERFAMILY CCCH zinc finger 73 99 IPR036855 GO:0046872
Trme7747g00001 242 ProSiteProfiles Zinc finger C3H1-type profile. 149 177 IPR000571 GO:0046872
Trme7747g00001 242 SMART c3hfinal6 149 176 IPR000571 GO:0046872
Trme7747g00001 242 SMART c3hfinal6 30 57 IPR000571 GO:0046872
Trme7747g00001 242 SMART c3hfinal6 71 98 IPR000571 GO:0046872
Trme7747g00001 242 ProSiteProfiles Zinc finger C3H1-type profile. 71 99 IPR000571 GO:0046872
Trme7747g00001 242 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 152 175 IPR000571 GO:0046872
Trme7747g00001 242 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 32 56 IPR000571 GO:0046872
Trme7747g00001 242 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 73 98 IPR000571 GO:0046872
Trme7747g00001 242 SUPERFAMILY CCCH zinc finger 35 56 IPR036855 GO:0046872
Trme7747g00001 242 PANTHER PROTEIN PHOSPHATASE RELATED 26 241 - -
Trme7747g00001 242 ProSiteProfiles Zinc finger C3H1-type profile. 30 58 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7747g00001 Trme-Chr7747 119 1730 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7747g00001 25 96 C2H2 Transcription Factor Family AT5G18550 44.156 3.30e-16 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme7747g00001 zf-CCCH 1.1e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7747g00001 - - pvu:PHAVU_011G180700g 359.377