Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme77476g00001 ATGCCTGCTGAAAATTGGGACGGTGAAGTAGAAGCATTTGCAGAAATCGATCCAACAGGTAGATTCGGTCGTTACAATGATTTACTCGGTTATGGAGCTGTGAAAAAAGTTTACAGAGGTTTTGATCAAGAAGAAGGAATTGAAGTTGCATGGAATCAAGTTAAACTTAGGAATTTCAGCGACGATCCTGTTCTTATTAATCGTCTTCATTCTGAAGTTGAATTGTTGAGAAATCTCAGTAACAAGTATATCATTGTTTGTTATAGTGTTTGGAAAGATGATGAACATGGTAATATCAATTTTATTACTGAGGTTTGTACTTCTGGAAATCTTAGGGATTATAGGAAGAAACATCGTCATGTTTCGATTAAAGCGTTTAAGAAATGGTCGAAACAAGTTCTTGAAGGATTGGAGTATCTTCATACACATGATCCTTGCATTATTCATAGAGATCTTAATTGCAGTAATATCTTTGTTAATGGGAACATTGGNCAGGTTAGTTTGTTGGTTTCTTATTTTGATTGA 525 0.3448 MPAENWDGEVEAFAEIDPTGRFGRYNDLLGYGAVKKVYRGFDQEEGIEVAWNQVKLRNFSDDPVLINRLHSEVELLRNLSNKYIIVCYSVWKDDEHGNINFITEVCTSGNLRDYRKKHRHVSIKAFKKWSKQVLEGLEYLHTHDPCIIHRDLNCSNIFVNGNIGQVSLLVSYFD 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme77476g00001 174 Gene3D Transferase(Phosphotransferase) domain 1 100 170 - -
Trme77476g00001 174 SUPERFAMILY Protein kinase-like (PK-like) 17 168 IPR011009 -
Trme77476g00001 174 Gene3D Phosphorylase Kinase; domain 1 7 99 - -
Trme77476g00001 174 Pfam Protein kinase domain 27 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme77476g00001 174 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 9 167 - -
Trme77476g00001 174 ProSiteProfiles Protein kinase domain profile. 23 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme77476g00001 174 FunFam Probable serine/threonine-protein kinase WNK1 8 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme77476g00001 Trme-Chr77476 28 552 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme77476g00001 7 168 MAP Kinase Kinase Kinase AT5G55560 74.074 1.87e-91 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Trme77476g00001 Pkinase 2.2e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme77476g00001 K08867 - gmx:100798280 316.62