Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme77441g00001 GACAAGGAAGGTATCCCTCCTGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACCCTTGCTGATTATAACATACAAAAGGAATCAACACTTCATTTGGTCCTAAGGCTCAGGGGAGGAACCATGATTAAGGTGAAGACTTTAACTGGAAAAGAGATTGAAATTGACATTGAGCCAACCGATACAATTGATCGTATCAAGGAACGTGTTGAAGAAAAAGAGGGAATTCCACCTGTGCAGCAGAGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCACGCTAA 297 0.4478 DKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRFSLSLSLSLSR 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme77441g00001 98 ProSiteProfiles Ubiquitin domain profile. 1 45 IPR000626 GO:0005515
Trme77441g00001 98 SMART ubq_7 46 97 IPR000626 GO:0005515
Trme77441g00001 98 SMART ubq_7 1 41 IPR000626 GO:0005515
Trme77441g00001 98 Gene3D - 46 92 - -
Trme77441g00001 98 ProSiteProfiles FERM domain profile. 46 98 IPR000299 GO:0005856
Trme77441g00001 98 Pfam Ubiquitin family 48 90 IPR000626 GO:0005515
Trme77441g00001 98 Pfam Ubiquitin family 1 43 IPR000626 GO:0005515
Trme77441g00001 98 SUPERFAMILY Ubiquitin-like 1 45 IPR029071 -
Trme77441g00001 98 ProSiteProfiles Ubiquitin domain profile. 46 88 IPR000626 GO:0005515
Trme77441g00001 98 FunFam Polyubiquitin-C 1 45 - -
Trme77441g00001 98 Gene3D - 1 45 - -
Trme77441g00001 98 SUPERFAMILY Ubiquitin-like 47 89 IPR029071 -
Trme77441g00001 98 PANTHER UBIQUITIN 1 47 - -
Trme77441g00001 98 PRINTS Ubiquitin signature 22 43 IPR019956 -
Trme77441g00001 98 PRINTS Ubiquitin signature 1 21 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme77441g00001 Trme-Chr77441 64 360 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme77441g00001 48 91 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 54.545 2.53e-11 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme77441g00001 K12158 - dct:110096879 166.007