Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7740g00001 CCCTTGGCCCAAGAAATCAGTCAAGTTCTTGGCAAATCCGTGAGTGGGTTGCATAAACAACACAGTTGTCCTGAAAATCTATCAGAACTAGGCAGCATTCCTAAAAGCAATGAAGGGAAAAGCTGCAGCCCATGTGGGGCAGGATCTCGATTGGAAAGAACAAGGAGCATCCATGCCTCTTCTGAGGTTTCCTTATCGATTTTAACTGCCCCTAAAAGTCAAGAAATTTCTGGGAGCACCAATATACCTGAAGATAAAAAACCTGAAGCAATTGTAATTCCTGAAGATTTTCTTTGCCCTATATCGTTGGAACTAATGAGAGATCCTGTTATTGTGGCCACTGGTCAGACATATGAGAGATCTTACATACAGAGATGGATTGATTGTGGAAATACAACCTGTCCAAAAACTCAGCAGAAGCTCCAACATTTGACCCTTACACCAAATTATGTTCTAAGGAGCCTTGTTTCTCAGTGGTGTATAGAGCACAACATTGAACAACCAACAGGACTAACCAATGGAAAAATAAAAAAGAGTGATGGATCATTCAGAGATGTTACAGGTGACATAGCGGCAATTGAAACTCTAGTCCGGAAGATCTCATGCAGGTCCATTGAGGAGTGTAGAGCAGCTGTTGCTGAAATTCGTTTATTATCCAAAAGAAGCACTGACAACAGGATACTAATTGCTGAAGCTGGAGCAATACCAGTTCTAGTCAACCTTTTAACTTCAGAAGATGTAATGACACAAGAAAATGCGGTTACATCAATTCTCAATCTTTCTATATATGAAAACAACAAAGGACTTATAATGCTTGCTGGTGCAATTCCATCCATTGTCCAAGTTCTCCGAGCTGGAACCATGGAAGCAAGAGAAAATGCGGCAGCAACGCTTTTTAGCTTGTCACTTGCAGATGAGAACAAAATAATAATTGGAGCCTCAGGAGCTATATCCGCTTTGGTAGAATTGCTCCAAAATGGAAGCCCTAGAGGGAAGAAGGACGCAGCAACAGCACTGTTCAATTTATGCATATATCAAGGGAACAAGGGCAGAGCCATAAGAGCGGGGATCATCACAGCACTGTTGAAAATGCTGACAGATTCAAGCAAATCAATGGTTGACGAAGCCCTTACAATTATGTCAGTTCTTGCCAGCCACCAAGAGGCAAAGGCTACCATAGTAAAAGCCAGCACTATACCAGTTTTAATAGATCTTTTGAGGACGGGATTGCCCCGCAACAAAGAGAATGCAGCTGCCATTTTACTTGCTTTGTGCAAGAGGGATACTGATAATCTTTCCTGTATCAGTAGACTCGGTGCTGTGATACCCCTTTCTGAACTTGCTAGGACYGGTACAGAGAGAGCAAAACGAAAGGCTACTTCACTATTGGAGCATCTTCGTAAGTTACAACAGCTTTGA 1419 0.4214 PLAQEISQVLGKSVSGLHKQHSCPENLSELGSIPKSNEGKSCSPCGAGSRLERTRSIHASSEVSLSILTAPKSQEISGSTNIPEDKKPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLVSQWCIEHNIEQPTGLTNGKIKKSDGSFRDVTGDIAAIETLVRKISCRSIEECRAAVAEIRLLSKRSTDNRILIAEAGAIPVLVNLLTSEDVMTQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAISALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKATIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTDNLSCISRLGAVIPLSELARTGTERAKRKATSLLEHLRKLQQL 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7740g00001 472 Pfam U-box domain 93 164 IPR003613 GO:0004842|GO:0016567
Trme7740g00001 472 SMART Ubox_2 96 159 IPR003613 GO:0004842|GO:0016567
Trme7740g00001 472 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 356 398 IPR000225 GO:0005515
Trme7740g00001 472 SMART arm_5 386 426 IPR000225 GO:0005515
Trme7740g00001 472 SMART arm_5 345 385 IPR000225 GO:0005515
Trme7740g00001 472 SMART arm_5 222 262 IPR000225 GO:0005515
Trme7740g00001 472 SMART arm_5 263 303 IPR000225 GO:0005515
Trme7740g00001 472 SMART arm_5 304 344 IPR000225 GO:0005515
Trme7740g00001 472 FunFam RING-type E3 ubiquitin transferase 171 371 - -
Trme7740g00001 472 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 274 316 IPR000225 GO:0005515
Trme7740g00001 472 Gene3D - 373 471 IPR011989 -
Trme7740g00001 472 PANTHER U BOX DOMAIN-CONTAINING 64 468 - -
Trme7740g00001 472 FunFam RING-type E3 ubiquitin transferase 372 471 - -
Trme7740g00001 472 SUPERFAMILY ARM repeat 192 466 IPR016024 -
Trme7740g00001 472 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 315 357 IPR000225 GO:0005515
Trme7740g00001 472 FunFam RING-type E3 ubiquitin transferase 92 167 - -
Trme7740g00001 472 SUPERFAMILY RING/U-box 87 167 - -
Trme7740g00001 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 166 IPR013083 -
Trme7740g00001 472 Gene3D - 174 266 IPR011989 -
Trme7740g00001 472 Gene3D - 267 372 IPR011989 -
Trme7740g00001 472 Pfam Armadillo/beta-catenin-like repeat 223 261 IPR000225 GO:0005515
Trme7740g00001 472 Pfam Armadillo/beta-catenin-like repeat 305 343 IPR000225 GO:0005515
Trme7740g00001 472 Coils Coil 452 472 - -
Trme7740g00001 472 ProSiteProfiles U-box domain profile. 92 166 IPR003613 GO:0004842|GO:0016567
Trme7740g00001 472 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 233 275 IPR000225 GO:0005515
Trme7740g00001 472 CDD RING-Ubox_PUB 94 146 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7740g00001 Trme-Chr7740 120 1637 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7740g00001 60 468 U-box Gene Family AT1G71020 72.289 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7740g00001 - - gmx:100815448 806.208