Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme77262g00001 ATGGAACACACAGCAATGGACCAATTTGAGTTCAATGACTTTATAAGAAGTCCATGTGAGAGACTGAGGCCAAGAACTGGGAAGATTGCCTGTGCCACCACAGGCAAAAGTGGAGGGGACATCAGCCAACATAAAGAGGAAAGTCCGGTAGCTAAAAGGACACGGAGGCCTCCTGAAGCTTCAGTTCCTCACAAGGATAAAAAAGCTTCAGTTCCTCACAAGGATAAAAAAGTCGATGTCAAAAAGCCGCACAAGTGTGACATTGATAATTGCCATATGAGTTTCACGACTAAGGCTGAGTTACAGTTGCACAAACATAACGTTTGCCCAGAGAAAGGGTGTGGTAAGAAGAAGTTCCGTTCCCACAAATACACGCTGATTCACCAGCGTGTTCATGAAGATGATAGGCCCTTTGAATGTCCATGGAAAGGCTGTTCCAAGTGTTTCAAGTGGGCATGGGCAATGACAGAGCATATAAGGGTGCATACTGGGGAGAAGCCTTATCAATGCAAGGTGGAGGGATGCGGCCTTTCTTTCAGATTTATATCAGATTTTAGCAGGCACAGGCGGAAAACAGGACACT 583 0.4563 MEHTAMDQFEFNDFIRSPCERLRPRTGKIACATTGKSGGDISQHKEESPVAKRTRRPPEASVPHKDKKASVPHKDKKVDVKKPHKCDIDNCHMSFTTKAELQLHKHNVCPEKGCGKKKFRSHKYTLIHQRVHEDDRPFECPWKGCSKCFKWAWAMTEHIRVHTGEKPYQCKVEGCGLSFRFISDFSRHRRKTGH 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme77262g00001 194 ProSiteProfiles Zinc finger C2H2 type domain profile. 168 194 IPR013087 -
Trme77262g00001 194 Gene3D Classic Zinc Finger 73 107 - -
Trme77262g00001 194 MobiDBLite consensus disorder prediction 30 79 - -
Trme77262g00001 194 PANTHER ZINC FINGER PROTEIN ZIC AND GLI 39 191 - -
Trme77262g00001 194 FunFam Probable lysine-specific demethylase ELF6 135 164 - -
Trme77262g00001 194 Gene3D Classic Zinc Finger 135 163 - -
Trme77262g00001 194 SMART c2h2final6 168 194 IPR013087 -
Trme77262g00001 194 SMART c2h2final6 84 106 IPR013087 -
Trme77262g00001 194 SMART c2h2final6 138 162 IPR013087 -
Trme77262g00001 194 SMART c2h2final6 107 132 IPR013087 -
Trme77262g00001 194 MobiDBLite consensus disorder prediction 40 79 - -
Trme77262g00001 194 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 167 IPR013087 -
Trme77262g00001 194 SUPERFAMILY beta-beta-alpha zinc fingers 165 190 IPR036236 -
Trme77262g00001 194 Pfam Zinc finger, C2H2 type 168 194 IPR013087 -
Trme77262g00001 194 ProSitePatterns Zinc finger C2H2 type domain signature. 170 194 IPR013087 -
Trme77262g00001 194 ProSitePatterns Zinc finger C2H2 type domain signature. 140 162 IPR013087 -
Trme77262g00001 194 SUPERFAMILY beta-beta-alpha zinc fingers 82 107 IPR036236 -
Trme77262g00001 194 SUPERFAMILY beta-beta-alpha zinc fingers 119 173 IPR036236 -
Trme77262g00001 194 Gene3D Classic Zinc Finger 164 194 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme77262g00001 14 194 C2H2 Transcription Factor Family AT5G04240 53.591 2.21e-58 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme77262g00001 zf-C2H2 0.0049 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme77262g00001 - - gmx:100799861 276.559