Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7723g00001 ATGGTGAATGGCAATCACTTGCTCAATTTTCAGTATGATCCAATATCACGTTCTCAACAAAGGGGTACTCCCCCTCCCCCTCCAGCAAGAAGGCAGAGGAAGAGAAGACCGTACAATAAAGATCTGTTTTTGCAGGCAAATTTCAAATTCATGGTGCTAGATTCAGGAAACTATTCACCTGAGTCAATGGATCCAGATAAAATGTTGCAGTGGGAAGATATTATATGTGTGACATATTCGACTCCCTTTCCAGTTCAGTGTCCAATTTGTTTGGAGCATCCCCTGTGTCCCCAAATAACCTCATGTGGGCACATTTTCTGTTTCCCATGTATACTACAATACTTGTTGTTGGGTGAAGAGGATCACAAAGGTGATTGCTGGAAAAGGTGTCCGTTGTGCTTTGTGATGATATCTGTCAAGGATTTATATACACTCCACATCACAAATGTCAAACAGTATCAAGTAGGAGATAATATTGAGTTCAGTTTCTTAACAAGGAAGAAGGATTCGTTTACTCTTTCGCATAAAAATAAACAAGAGACTGATAACTCATCATGTAGCCAACGAGATGTATATGACCCCTTTTCTAAGTTCACACTCACGTCAGATGTAGATCTCTCAGTGAGACATGCAATATCAGATCTAGATGGTTGGCTGGCCAGAGCTGATTCAGGTCTTGTTGACGACCTGGAGAAGCTTCCATATGTTAGTGCTGCAATGCAACAATTAAAACAGAGAAAGAAGTATTGGAATGAGCACAAGGCTTGTGACAATGAAAAATCTTCTAACATCATTGATTATACACACCAGATACCATCAATATCTGCAAATGCTGTGGATACTGATGACGAAAGCTGTTCTAATGGATCAAGAACTTCCTCTACTGATTGCCCTGATCAAAGTAAGGTTGTAATGCTGGATAAGTCAGCTGCTGGAGCCTGTCAGGATGAAACTTTGGATGTGGACAAGGTACTAGTGGAGCAGGAAATGAATCTGGCTTCTTCGTATGAGGAGAAAAATTGTATTCAAGAGCATTCAAATGGCATTGGAGATGCAAAGGAAAATGATTCGTACAATTTCTATCAGGTAACTGATGGCAATTGA 1104 0.4031 MVNGNHLLNFQYDPISRSQQRGTPPPPPARRQRKRRPYNKDLFLQANFKFMVLDSGNYSPESMDPDKMLQWEDIICVTYSTPFPVQCPICLEHPLCPQITSCGHIFCFPCILQYLLLGEEDHKGDCWKRCPLCFVMISVKDLYTLHITNVKQYQVGDNIEFSFLTRKKDSFTLSHKNKQETDNSSCSQRDVYDPFSKFTLTSDVDLSVRHAISDLDGWLARADSGLVDDLEKLPYVSAAMQQLKQRKKYWNEHKACDNEKSSNIIDYTHQIPSISANAVDTDDESCSNGSRTSSTDCPDQSKVVMLDKSAAGACQDETLDVDKVLVEQEMNLASSYEEKNCIQEHSNGIGDAKENDSYNFYQVTDGN 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7723g00001 367 CDD RING-HC_RNF10 85 142 - -
Trme7723g00001 367 ProSiteProfiles Zinc finger RING-type profile. 87 133 IPR001841 -
Trme7723g00001 367 MobiDBLite consensus disorder prediction 278 299 - -
Trme7723g00001 367 SUPERFAMILY RING/U-box 86 140 - -
Trme7723g00001 367 Pfam Zinc finger, C3HC4 type (RING finger) 87 133 IPR018957 GO:0046872
Trme7723g00001 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 193 IPR013083 -
Trme7723g00001 367 FunFam RING finger protein 10 80 148 - -
Trme7723g00001 367 SMART ring_2 87 133 IPR001841 -
Trme7723g00001 367 ProSitePatterns Zinc finger RING-type signature. 102 111 IPR017907 -
Trme7723g00001 367 MobiDBLite consensus disorder prediction 14 35 - -
Trme7723g00001 367 PANTHER RING FINGER 10 FAMILY MEMBER 2 366 IPR039739 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7723g00001 1 366 C3H Transcription Factor Family AT3G26730 54.881 4.63e-137 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7723g00001 K26979 - gmx:100818033 602.438