Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme76956g00001 TCTAAGAGAATTGCAGGAGAAATCGTGGAAGTGCAAGGAGGTCACATTGTACGGTCAACAGGACGGAAAGACCGTCACAGCAAAGTATGCACGGCGAAAGGTCCCCGTGACCGCCGTGTTCGACTCTCGGCCCACACCGCGATTCAATTCTACGACGTGCAAGACCGTTTGGGCTACGACCGGCCCAGTAAGGCAGTTGATTGGCTTATCAAAAAAGCCAAATCCGCCATTGACGAACTCGCTCAGCTTCCGGCATGGAATCCCACCGCCACATGTTCTACAACACCACAACAACAGCAGCAGCAGCTGCAACAACAAACAAACGAAATGTTCAACCGGCAATCTCCGGTGGACAACCATCAAGTAACCGCTTCCACCATTCACCGCTCAGCGGCTGCATTAGAGCGAAGAATGCCACCACAACAAGAACAATTTTCTTCGCAGCAACTAGAGTTAGACTATAACAATAGCAGCAGCGGGAAACATGGTTTTCTTCAAGGCTCATTGGATACTGACATTGCGGNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNCAACCGCCGGATTTGCTTTCTCGAACGGCGGCTACCGCCCAGCAGCAAGATCTCCGCCTCTCATTGCAATCTTTTCAAGATCCTATTCTGCTTCAGAGCCACCATGACAACCACCATCACCACAACCAAGTGCTTTTCGCCGGAAACTCCTCACTCGGCGGCTACGACGGTGGTGGAAGTGGAAGCACCTTGTGGTCTGAGCAGCA 788 0.481 SKRIAGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDELAQLPAWNPTATCSTTPQQQQQQLQQQTNEMFNRQSPVDNHQVTASTIHRSAAALERRMPPQQEQFSSQQLELDYNNSSSGKHGFLQGSLDTDIAXXXXXXXXXXXXXXXXXXXXQPPDLLSRTAATAQQQDLRLSLQSFQDPILLQSHHDNHHHHNQVLFAGNSSLGGYDGGGSGSTLWSEQ 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme76956g00001 262 Pfam TCP family transcription factor 21 135 IPR017887 -
Trme76956g00001 262 Coils Coil 195 195 - -
Trme76956g00001 262 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 237 IPR005333 GO:0003700
Trme76956g00001 262 Coils Coil 173 174 - -
Trme76956g00001 262 ProSiteProfiles TCP domain profile. 22 80 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme76956g00001 Trme-Chr76956 1 788 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme76956g00001 5 88 TCP Transcription Factor Family AT3G15030 92.857 2.02e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trme76956g00001 TCP 2.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme76956g00001 - - mtr:25502512 379.407