Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme768901g00001 TTCTCACCATACCAAGTCGTCGGCGACGGCAGCTTCGGCCTAGTCTACAAAGCTCGTCTCTCAACCGACGTCGTCGTCGCCGTCAAAAAACTCTCCCCCGACGCCTTCCAAGGATTCCGCGAATTTGCGGCGGAGATGGAAACCCTAAACAAGCTTTCCCACCGTAACATCGTCAAAATCCTCGGTTATTGGGCTTCTGGACCTGAACGGTTACTCGTTTACGAGTACATCGAAAAAGGAAAC 243 0.5226 FSPYQVVGDGSFGLVYKARLSTDVVVAVKKLSPDAFQGFREFAAEMETLNKLSHRNIVKILGYWASGPERLLVYEYIEKGN 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme768901g00001 81 Gene3D Phosphorylase Kinase; domain 1 7 78 - -
Trme768901g00001 81 ProSiteProfiles Protein kinase domain profile. 1 81 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme768901g00001 81 Pfam Protein kinase domain 4 80 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme768901g00001 81 ProSitePatterns Protein kinases ATP-binding region signature. 7 30 IPR017441 GO:0005524
Trme768901g00001 81 SUPERFAMILY Protein kinase-like (PK-like) 1 81 IPR011009 -
Trme768901g00001 81 FunFam Phytosulfokine receptor 2 1 76 - -
Trme768901g00001 81 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme768901g00001 Trme-Chr768901 1 243 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme768901g00001 1 81 Receptor kinase-like Gene Family AT5G07280 55.556 2.42e-23 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Trme768901g00001 Pkinase 1.3e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme768901g00001 - - lja:Lj0g3v0241799.1 149.058