Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme768005g00001 ATGCTAATTTCTGATTGCGTCAAGTCTCGGTACTTAGCAGGGTGCAGAATATCACTTGTTGGTTTTGAAGCTTTTGAAATGCGGAAGCTAGTTAATATGGTGCACAGAGGCGGAGGCTCCCGAAGCTTGTCTTTCAATGATAAGTTGACACACATAGTAATTGGGAATCCCACAGAAAT 179 0.4246 MLISDCVKSRYLAGCRISLVGFEAFEMRKLVNMVHRGGGSRSLSFNDKLTHIVIGNPTE 59
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme768005g00001 59 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 11 57 - -
Trme768005g00001 59 Pfam BRCA1 C Terminus (BRCT) domain 9 57 IPR001357 -
Trme768005g00001 59 Gene3D BRCT domain 4 59 IPR036420 -
Trme768005g00001 59 SUPERFAMILY BRCT domain 9 57 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme768005g00001 Trme-Chr768005 9 187 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme768005g00001 11 59 Core DNA Replication Machinery Family AT1G77320 61.224 2.16e-17 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme768005g00001 K10728 - gmx:100804966 85.5001