Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme76794g00001 CATGTTGGACTTAGAACAAGGAGCGATGGCGATGCTATCTCTATCTATGGTTCATCAAACATCTGGGTTGATCATCTTTCCTTATCTAACTGTGACGATGGTCTTGTTGATGTTATTTATGGCTCTACTGCAATCACAATATCAAATTGCCACTTGACCAAACATAATGATGTGATGTTGTTTGGAGCTAGTGATACATTTAAAGATGACAAGATAATGCAAATTACAGTTGCATTCAACCATTTTGGACAAGGATTAATCCAAAGAATGCCAAGGTGTAGATGGGGATTTTTCCATGTTTTGAACAATGATTACACACATTGGATTATGTATGCAATTGGTGGTAGTTCAGGACCAACAATTCTTAGTCAAGGAAACCGTTTCATTGCTCCCGACAACAATGCTGCAAAAACAGTTACACATAGAGATTATGCATCACAAGATGTTTGGTCAAAATGGCAATGGACATCACAAGATGATTTTTTCATGAATGGTGCACAATTTGTTCAATCTGGTTCTCCTATTAAGAATCTTCCATTCAAAAAAGGATATTTGATGAAACCAAGACATGGTAGAGAAGCTAATAGGCTTACAAGGTTTGCTGGGGCACTCAATTGCATTGTGGGCAGACCTTGCTAG 639 0.3787 HVGLRTRSDGDAISIYGSSNIWVDHLSLSNCDDGLVDVIYGSTAITISNCHLTKHNDVMLFGASDTFKDDKIMQITVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWIMYAIGGSSGPTILSQGNRFIAPDNNAAKTVTHRDYASQDVWSKWQWTSQDDFFMNGAQFVQSGSPIKNLPFKKGYLMKPRHGREANRLTRFAGALNCIVGRPC 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme76794g00001 212 Gene3D - 1 205 IPR012334 -
Trme76794g00001 212 Pfam Pectate lyase 8 128 IPR002022 -
Trme76794g00001 212 SUPERFAMILY Pectin lyase-like 6 212 IPR011050 -
Trme76794g00001 212 PRINTS Pollen allergen Amb family signature 111 130 IPR018082 -
Trme76794g00001 212 PRINTS Pollen allergen Amb family signature 153 177 IPR018082 -
Trme76794g00001 212 PRINTS Pollen allergen Amb family signature 183 206 IPR018082 -
Trme76794g00001 212 PRINTS Pollen allergen Amb family signature 9 30 IPR018082 -
Trme76794g00001 212 PRINTS Pollen allergen Amb family signature 89 108 IPR018082 -
Trme76794g00001 212 PANTHER PECTATE LYASE 18-RELATED 1 210 IPR045032 GO:0030570
Trme76794g00001 212 SMART amb_all 1 134 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme76794g00001 Trme-Chr76794 3 775 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme76794g00001 1 212 Polysaccharide Lyase AT5G15110 62.441 3.38e-97 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme76794g00001 K01728 - gmx:100780236 376.326