Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7671g00001 TTGAAGAGACTTGGGAAAGGATTCCAAGGGGCAAACAATCAAGGTTTATGTGGAGTAGATATTTTTACTTTGAGAGCTTGCAACAAGAATTCAGATTTAAACGTCARCGACATTGATACCTCGGATCAAGACCACCTCAAAAATGGTAATCTCGCAACTCCTCGCCCGGAGGCTGCAGATTTCCAAATGCATTGTAACCAGACTCATTGCTCAAAATCAAGAAGGTTTCCTTTAAGTGTCGTCACAGCAGCAAGTGTTACAATCACCGCTCTCACATTCATAGGTGTTGGATTGTTTACATTCGTCAAATACCGCCGTCGAAAGCAGAAGGTTACAGCAAACTCTTCTGAAGGGAAACTTAGTCCTCAGCAGCCTAAAGAGTTATACAGAAAAAGTCCATCTACCCTGGTTAATCTTGACTATTATAATGGATGTTATCCAATGCCTGATGATCAAAATGCTGGGGGATTATACAGTGAATATCTAAACCAGTTTAGGTTTAATGTTGATGAAGTCGAATCTGCAACACAATATCTTTCAGAAGCAAATTTATTGTGTAGGAGCAAATTCTCAGCAATGTATAAAGGAATTCTCAGAGACGGTTCTCTTGTCGCTATTAGAAGCATTAACATGACATGCTGCAAAACCGAGGAAGCTGAATTTGTAAAGGGATTGTGCTTATTAACCTCCCTTAGACATGAAAATGTTGTTAAGCTAAGAGGTTTCTGTTGCTCAAGTAGTAGAGGTGAATGCTACCTTATTTACGACTTTGCAACGATGGGCTACCTATCTCAATACCTTGACACAGAGGATAGAAGTGACCATTTGCTTGACTGGTCCAAGAGGGTTTCTATCATCAAGGGCATTGCAAAAGGTATAGGATATCTGCACAGCAATGAAGCAAGCAAACCTTCAATAGTACACCAGAATATATCAGTGGAGAATGTTCTCCTTGACAAAGAGTTTAATCCATTGATCATGGATGCAGGACTTCCTAAGCTTCTCGCAGACGATGTTGTTTTCTCAGCTCTAAAAGTAAGTGCCGCCATGGGATACCTAGCTCCTGAATACATTACTACAGGACGCTTTACCGAGAAGAGTGACATATACGCATTTGGAGTTATCGTACTTCAAGTTTTATCTGGCAAGACAGCAATCGGCGGTTCAATACGGACGGCATTCGAGTCTTTCAGATTTGACGATTGCATCGACACAAATCTTAAGGGAAGATATTCTAGTTCTGAAGCAACGACACTTACAAAGCTTGCAGTACAGTGTATCCATGAGAGTCCTGACCAAAGACCAAGCATGGTGGATGTGATTCAGGAGCTAAGGGTGTTTCCGGCTAATTCATAA 1356 0.4108 MKRLGKGFQGANNQGLCGVDIFTLRACNKNSDLNVXDIDTSDQDHLKNGNLATPRPEAADFQMHCNQTHCSKSRRFPLSVVTAASVTITALTFIGVGLFTFVKYRRRKQKVTANSSEGKLSPQQPKELYRKSPSTLVNLDYYNGCYPMPDDQNAGGLYSEYLNQFRFNVDEVESATQYLSEANLLCRSKFSAMYKGILRDGSLVAIRSINMTCCKTEEAEFVKGLCLLTSLRHENVVKLRGFCCSSSRGECYLIYDFATMGYLSQYLDTEDRSDHLLDWSKRVSIIKGIAKGIGYLHSNEASKPSIVHQNISVENVLLDKEFNPLIMDAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKTAIGGSIRTAFESFRFDDCIDTNLKGRYSSSEATTLTKLAVQCIHESPDQRPSMVDVIQELRVFPANS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7671g00001 451 SUPERFAMILY Protein kinase-like (PK-like) 155 445 IPR011009 -
Trme7671g00001 451 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 83 444 - -
Trme7671g00001 451 Gene3D Transferase(Phosphotransferase) domain 1 259 447 - -
Trme7671g00001 451 ProSiteProfiles Protein kinase domain profile. 179 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme7671g00001 451 FunFam Protein NSP-INTERACTING KINASE 2 258 448 - -
Trme7671g00001 451 FunFam Protein NSP-INTERACTING KINASE 2 150 257 - -
Trme7671g00001 451 Gene3D Phosphorylase Kinase; domain 1 152 257 - -
Trme7671g00001 451 Pfam Protein tyrosine and serine/threonine kinase 184 444 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7671g00001 Trme-Chr7671 338 1870 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7671g00001 1 292 Miscellaneous Gene Families AT4G22730 50.649 9.24e-89 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Trme7671g00001 PK_Tyr_Ser-Thr 1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7671g00001 - - gmx:100777169 673.315