Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme76713g00001 ATGGCTGCTAGTAGTCTAAGATGTATTGCTTTTGCTCACATGGAGATTTCAGATTCAGAAGGTAATGATTATATGATCACAAGGGAGAAAAAAACACATCAAATCCTAAGAGAAGATGGATTGACCTTGCTTGGCATTGTTGGCCTCAAGGATCCATGCAGACCAAACACAAAGAAAGCTGTGGAAACTTGCAAAGCTGCAGGAGTTGAAATTAAGATGATCACCGGCGATAACATATTCACCGCAAAGGCAATAGCAACAGAATGTGGAATATTAGATCCTAAAAATGCCAATGCAAATGCTGGAGAAGTTGTGGAAGGTGTGGAATTCAGAAACTATACAGAAGAAGAGAGAATGGAGAAAGTCGATAAGATTCGAGTAATGGCAAGATCATCCCCTATGGACAAACTTTTGATGGTGCAATGCTTAAGAAAGAAAGGCCATGTAGTTGCAGTCACAGGCGACGGCACGAACGATGCACCTGCATTAAAAGAAGCTGATATAGGACTTTCTATGGGAATCCAAGGAACCGAAGTTGCAAAAGAAAGTTCTGATATCGTTATCTTAGACGACAACTTCAATTCGGTTGCAACTGTTTTAAGCAGTTTCATCCGGTGA 618 0.4078 MAASSLRCIAFAHMEISDSEGNDYMITREKKTHQILREDGLTLLGIVGLKDPCRPNTKKAVETCKAAGVEIKMITGDNIFTAKAIATECGILDPKNANANAGEVVEGVEFRNYTEEERMEKVDKIRVMARSSPMDKLLMVQCLRKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFNSVATVLSSFIR 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme76713g00001 205 Gene3D - 2 52 IPR023299 GO:0000166
Trme76713g00001 205 NCBIfam HAD-IC family P-type ATPase 124 200 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme76713g00001 205 PRINTS H+-transporting ATPase (proton pump) signature 185 205 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme76713g00001 205 PRINTS H+-transporting ATPase (proton pump) signature 153 169 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme76713g00001 205 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 1 52 IPR023299 GO:0000166
Trme76713g00001 205 PRINTS P-type cation-transporting ATPase superfamily signature 177 189 - -
Trme76713g00001 205 PRINTS P-type cation-transporting ATPase superfamily signature 153 172 - -
Trme76713g00001 205 PRINTS P-type cation-transporting ATPase superfamily signature 67 77 - -
Trme76713g00001 205 PRINTS P-type cation-transporting ATPase superfamily signature 45 56 - -
Trme76713g00001 205 Gene3D - 53 193 IPR023214 -
Trme76713g00001 205 Pfam haloacid dehalogenase-like hydrolase 41 167 - -
Trme76713g00001 205 SUPERFAMILY HAD-like 36 200 IPR036412 -
Trme76713g00001 205 PANTHER CATION TRANSPORTING ATPASE 1 200 - -
Trme76713g00001 205 FunFam Calcium-transporting ATPase 46 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme76713g00001 Trme-Chr76713 25 734 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme76713g00001 1 200 Primary Pumps ATPases AT3G63380 78.000 3.17e-96 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme76713g00001 K01537 - gmx:100790034 325.094