Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7666g00001 ATGATACTCGCAATTTTTCATGTAGTGACTTCAAACAGTCAGTGCATAAACACCATGATGAAGTGCATTGCGCTTGGCGCAGTTGAGTTCCTCACTAAACCACTCTCTGAGGACAAACTAAAAAATATTTGGCAGCATGTGGTTCACAAGGCATTCAATGCTGAGTCAAGTGCTCTTTCTGAATCACTAAAACCTGTTAAAGAATCGGTAGAGTCTATGTTGCAGCTCGAAACTGACAACAAACTACATGAGAGTACAATATTGATAGATTTAGAGAATGTGTCCAAGTCTAGTGATAATGAACACGAGCATTCTGCGGCAAGTGATAAATATCCGGCACCTTCGACCCCTCAGTTAAAACAAGGTGCGAGGTTAGTGGATGATGGCGATTGCCATGAGCAGACTAATTGCTCAATAGAAAAAGAAAGTGGGGAACACGACGGTGGTGAATGTAAATTTGTCGAAACTTCATGTGAGAATGTGAACGCAGAAAGTTCTCCTCAACCAACGAAACCTCTGATTAAGGAGGAAGATGATTTTGCCAATGGTTCGAAGGGCGAGAGTAGTTTTTTAACGAATCCCCAAAGTAAAAAGTTACTCGGTGACACTGGTGGTAATGCATCTCCAAATGAAACAAGTGGTCCTAAGGATTCATGTGAGAATAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACGCCTGAGCTGCACAAAAAATTCGTGAAGGCAGTCGAACAACTAGGTATTGATCAAGCCATTCCTTCTCGTATATTGGAGTTAATGAAAGTCGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAG 828 0.4191 MILAIFHVVTSNSQCINTMMKCIALGAVEFLTKPLSEDKLKNIWQHVVHKAFNAESSALSESLKPVKESVESMLQLETDNKLHESTILIDLENVSKSSDNEHEHSAASDKYPAPSTPQLKQGARLVDDGDCHEQTNCSIEKESGEHDGGECKFVETSCENVNAESSPQPTKPLIKEEDDFANGSKGESSFLTNPQSKKLLGDTGGNASPNETSGPKDSCENKANRKKMKVDWTPELHKKFVKAVEQLGIDQAIPSRILELMKVEGLTRHNVASHLQ 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7666g00001 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 224 276 IPR017930 -
Trme7666g00001 276 NCBIfam myb-like DNA-binding domain, SHAQKYF class 227 276 IPR006447 GO:0003677
Trme7666g00001 276 SUPERFAMILY CheY-like 7 52 IPR011006 -
Trme7666g00001 276 MobiDBLite consensus disorder prediction 162 225 - -
Trme7666g00001 276 ProSiteProfiles Response regulatory domain profile. 1 48 IPR001789 GO:0000160
Trme7666g00001 276 MobiDBLite consensus disorder prediction 94 121 - -
Trme7666g00001 276 Gene3D - 6 127 - -
Trme7666g00001 276 Pfam Myb-like DNA-binding domain 230 276 IPR001005 -
Trme7666g00001 276 FunFam Two-component response regulator 223 276 - -
Trme7666g00001 276 SUPERFAMILY Homeodomain-like 226 276 IPR009057 -
Trme7666g00001 276 PANTHER TRANSCRIPTION ACTIVATOR GLK1 9 276 IPR044825 GO:0003700|GO:0045893
Trme7666g00001 276 Gene3D - 223 276 - -
Trme7666g00001 276 MobiDBLite consensus disorder prediction 185 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7666g00001 Trme-Chr7666 152 1454 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7666g00001 8 276 Response Regulator Gene Family AT4G18020 51.246 4.82e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trme7666g00001 Myb_DNA-binding 2.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7666g00001 - - gmx:100784905 420.624