Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7665g00001 ATGTTGTCCAACCATTTCAGCCATAAACACGGGGATTCTCTGATTGAATTTTCTTATGGTGACACTTTCATTGTCTCCTTGAAGTCTAATGATGAAACCATTGTCCTTCAAGAGGAAAATGATGGCAAACTATTTATTCTCAACAATAGTACTATACTTTCAGGAAATGCGATCAATATTAGCTGCATTGATACTAACTCTTCCGAGGCTGGGTATAGTTATGATATATTTGCTAGGTCTAAGATGTGCAGTCTGAAGTTTCATTCTTCTCCGAAGAATGTCCAACGGGCTACTTTAGCAACTCTTTCACCACAATTCCTCGTGATTCCATTTGGTTATTTTAGTTCTTCTGAAACTCCCGAGCTAGAAATTTGCATAACCCCTAAGATGCAAATCTACGTAAGGACTCTGACTGGAAAGATGATCCCTCTGAGGGTTGAAAGTTCGGACACAATCGCCAATGTGAAGGCAAAGATTCTTGACAAGGAAACAATCCCAGTGCACCAGCAACATCTGATGTTTTCCGATAAGCCACTAGATGACAACCAGACCCTTGCTAATTACAACATCCAAGAGAAGTCGACCCTCCACCTCACTCTCCGCCTTCCCTAG 612 0.4134 MLSNHFSHKHGDSLIEFSYGDTFIVSLKSNDETIVLQEENDGKLFILNNSTILSGNAINISCIDTNSSEAGYSYDIFARSKMCSLKFHSSPKNVQRATLATLSPQFLVIPFGYFSSSETPELEICITPKMQIYVRTLTGKMIPLRVESSDTIANVKAKILDKETIPVHQQHLMFSDKPLDDNQTLANYNIQEKSTLHLTLRLP 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7665g00001 203 SUPERFAMILY Ubiquitin-like 112 202 IPR029071 -
Trme7665g00001 203 Gene3D - 126 203 - -
Trme7665g00001 203 FunFam Polyubiquitin-C 130 203 - -
Trme7665g00001 203 Pfam Ubiquitin family 132 202 IPR000626 GO:0005515
Trme7665g00001 203 PRINTS Ubiquitin signature 161 181 IPR019956 -
Trme7665g00001 203 PRINTS Ubiquitin signature 182 203 IPR019956 -
Trme7665g00001 203 PRINTS Ubiquitin signature 140 160 IPR019956 -
Trme7665g00001 203 PANTHER UBIQUITIN 130 202 - -
Trme7665g00001 203 SMART ubq_7 130 201 IPR000626 GO:0005515
Trme7665g00001 203 ProSiteProfiles Ubiquitin domain profile. 130 203 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7665g00001 Trme-Chr7665 297 1135 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7665g00001 130 202 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 69.863 8.97e-29 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7665g00001 - K02927 mtr:11432566 269.626