Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme76429g00001 ATGTCAGTGGATTTGGATGATCTTTCTGTTTTGATCCTTGATGAAGCAGATCGGCTTTTGCAGCTAGGATTTAGTGCTGAAATTCAGGAACTTGTTCGATTGTGTCCCAAAAAAAGGCAGACCATGCTTTTTTCAGCAACCATGACCGAGGAGGTTAATGATCTTGTTAAACTTTCACTATCAAAACCCCTGCGTCTTTCTGCTGACCCATCTGCAAAACGGCCAGCATCCTTGACTGAGGAGTAA 246 0.4309 MSVDLDDLSVLILDEADRLLQLGFSAEIQELVRLCPKKRQTMLFSATMTEEVNDLVKLSLSKPLRLSADPSAKRPASLTEE 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme76429g00001 81 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 2 81 - -
Trme76429g00001 81 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 12 20 IPR000629 -
Trme76429g00001 81 Gene3D - 1 74 IPR027417 -
Trme76429g00001 81 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 66 IPR014001 -
Trme76429g00001 81 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 66 IPR027417 -
Trme76429g00001 81 Pfam DEAD/DEAH box helicase 3 55 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme76429g00001 Trme-Chr76429 11 371 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme76429g00001 2 66 Eukaryotic Initiation Factors Gene Family AT3G13920 38.462 4.04e-10 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme76429g00001 K13181 - gmx:100776684 138.658