Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme76401g00001 ATGGATGGAATGTCAGCGAAGAAAACTGTGTTTATTATCGGGGCCACTAATCGACCAGATATTATAGATCCTGCTCTACTACGACCTGGACGTCTGGACCAGTTGATCTATATCCCCCTTCCAGATGAGGATTCCCGCCATCAGATATTCAAAGCTGCCTTGAGAAAATCCCCCATCGCAAAGGATGTTGACATCAGAGCTCTTGCAAAGTACACTCAAGGCTTCAGTGGTGCTGATATTACTGAGATTTGCCAGCGTGCATGCAAGTATGCTATAAGGGAGAACATTGAGAAGGTACATGCNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGAGAGAGAAAGAAGGAGAAGCGAAAATCCCGAGGCTATGGAAGAGGATAATGAAGATGATGAGGTAGCTGAAATCAAAGCAGCACATTTTGAAGAATCAATGAAATATGCAAGAAGGAGTGTTAGCGATGCTGATATTCGCAAGTATCAAGCGTTTGCCCAAACATTGCAGCAATCAAGAGGGTTTGGAAGCGAGTTCAGGTTTGCAGACGCTAGTGCCGGCGGAACTGCTGCTGCTTCAGCTGACCCTTTTGCAAGTGCTGGGGGAGCTGACGAGGACGACCTCTACA 676 0.4083 MDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKAALRKSPIAKDVDIRALAKYTQGFSGADITEICQRACKYAIRENIEKVHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXERERRRSENPEAMEEDNEDDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFADASAGGTAAASADPFASAGGADEDDLY 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme76401g00001 225 Gene3D - 1 41 IPR027417 -
Trme76401g00001 225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 182 IPR027417 -
Trme76401g00001 225 MobiDBLite consensus disorder prediction 206 225 - -
Trme76401g00001 225 Pfam AAA+ lid domain 62 99 IPR041569 -
Trme76401g00001 225 Pfam ATPase family associated with various cellular activities (AAA) 1 40 IPR003959 GO:0005524|GO:0016887
Trme76401g00001 225 Pfam Vps4 C terminal oligomerisation domain 153 183 IPR015415 -
Trme76401g00001 225 Coils Coil 130 135 - -
Trme76401g00001 225 PANTHER AAA-FAMILY ATPASE 1 188 - -
Trme76401g00001 225 ProSitePatterns AAA-protein family signature. 10 28 IPR003960 GO:0005524|GO:0016887
Trme76401g00001 225 Gene3D - 122 182 - -
Trme76401g00001 225 Gene3D - 44 112 - -
Trme76401g00001 225 MobiDBLite consensus disorder prediction 130 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme76401g00001 Trme-Chr76401 1 676 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme76401g00001 1 98 Calmodulin-binding Proteins AT3G56690 40.404 1.75e-16 76.3