Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7639g00002 ATCACTAACTTCCCGGAAGATGCTACTTCGGAGGATCTTTGGTGTTTGTTCCGGAAGTATGGGAGAGTGGGTGAAGTTTACATACCAAAGAAGCTGGATGTTAGGGGTCGTCGTTTTGGTTTCGTAAAATTCAAGGAGGTTAAGGAGGTGGAGTCTCTAAGTGAAAGTTTGAGGGATGTTTGGCTGGGAAACTTCAAGCTCCGCGTTAACCGATCACGCTTTGGCCGATCGGAGAAGAAGAAGGAGTTTCAATCCGAAATTTCTCCTCGCCATGAGTCAGATGTTGAGGTGGAGGTGGTTAAGTCAGGAANNNNNTTTTAA 321 0.4517 ITNFPEDATSEDLWCLFRKYGRVGEVYIPKKLDVRGRRFGFVKFKEVKEVESLSESLRDVWLGNFKLRVNRSRFGRSEKKKEFQSEISPRHESDVEVEVVKSGXXF 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7639g00002 106 SUPERFAMILY RNA-binding domain, RBD 1 88 IPR035979 GO:0003676
Trme7639g00002 106 SMART rrm1_1 1 70 IPR000504 GO:0003723
Trme7639g00002 106 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 83 - -
Trme7639g00002 106 Gene3D - 1 84 IPR012677 -
Trme7639g00002 106 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1 67 IPR000504 GO:0003723
Trme7639g00002 106 CDD RRM_SF 1 70 - -
Trme7639g00002 106 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 74 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7639g00002 Trme-Chr7639 1557 1877 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7639g00002 1 96 Eukaryotic Initiation Factors Gene Family AT4G34110 27.083 3.16e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7639g00002 K12891 - gsj:114386664 58.9214