Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme76132g00001 ATGTTAGGACCATCAGGCAGTGGCAAAACCACACTCCTAACAGCTCTCGGAGGCCGTCTAGCCGGCAAACTAACCGGAAAAACCACATACAACAATCAACCTTTCTCAGGTTCAATAAAAAGAAGAACAGGTTTTGTAGCTCAAGATGATGTTCTTTACCCTCACCTAACCGTAACCGAAACTCTAGTGTTCACTGCACTTTTGAGGCTTCCACAAACCTTAACAAGAGATGAAAAAGTTGAACATGTTGAGAGAGTTATAACTGAGTTAGGACTAATTAATTGTAGGAATAGTATGATTGGAGGACCACTTTTGAGAGGTATATCAGGTGGTGAAAAAAGGAGAGTGAGTATAGGACAAGAAATGTTGATTAATCCAAGTTTATTGTTGCTTGATGAACCTACTTCTGGTTTGGATTCTACAACTGCTTTAAGGATCTTGAACACTATCAAAAAACTTGCTAGTGGTGGTAGAACTGTTGTCACAACAATTCATCAACCTTCNNNNNNNNNNANNNATATGTTTGATAAGGTTGTGTTGCTATCTGAAGGGTGTCCTATCTATTATGGTCCTGCTTCAACTGCTCTAGAATATTTCTCATCTGTTGGTTTCTCAACTAGCATGACTGTTAATCCAGCTGATCTCTTGCTTGATCTTGCCAATGGTAATAATCACTAA 678 0.3835 MLGPSGSGKTTLLTALGGRLAGKLTGKTTYNNQPFSGSIKRRTGFVAQDDVLYPHLTVTETLVFTALLRLPQTLTRDEKVEHVERVITELGLINCRNSMIGGPLLRGISGGEKRRVSIGQEMLINPSLLLLDEPTSGLDSTTALRILNTIKKLASGGRTVVTTIHQPSXXXXXMFDKVVLLSEGCPIYYGPASTALEYFSSVGFSTSMTVNPADLLLDLANGNNH 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme76132g00001 225 ProSitePatterns ABC transporters family signature. 108 122 IPR017871 GO:0005524|GO:0016887
Trme76132g00001 225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 202 IPR027417 -
Trme76132g00001 225 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 1 221 - -
Trme76132g00001 225 Pfam ABC transporter 1 136 IPR003439 GO:0005524
Trme76132g00001 225 Gene3D - 1 203 IPR027417 -
Trme76132g00001 225 Pfam ABC-2 type transporter 165 222 IPR043926 GO:0140359
Trme76132g00001 225 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 2 208 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme76132g00001 Trme-Chr76132 112 789 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme76132g00001 1 184 Calmodulin-binding Proteins AT2G36910 28.125 3.26e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme76132g00001 K05681 - gmx:100780191 351.288