Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme75898g00001 ATGAGTTTATTATTACTCTTGAAGTGGATGATGGAATTTGTTACACTCATCCTCAAAACTTACCCGGTTGGTGTAAAGCAAGATGGAAATGCAACCCACTTTTTCCACAGAGCAATTAAGGCTTACAATACTGGCACACGAAAGCGCCGAAAAATACATGATCAGGATTTTGGTGATGTTCGCTGGCACAAAACTGGAAGAACTAAACCAGTAATCTTGAATGGGGCTCAAAAAGGCTGTAAAAAGATTATGGTTCTGTATATGAGCAGTGCCGGGGGAGGAAAAGCTGAGAAAACGAATTGGGTTATGCATCAATATCATTTAGGAACGGAAGAGGATGAAAACGACGGGGAATTTGTTATCTCTAAAGTGTTTTACCAGCAGCAACATGTCAAATTGGGTGATATAGATGAACAGGATATTCCTGAAGTCACTGAAGAAACAATCAT 449 0.3964 MSLLLLLKWMMEFVTLILKTYPVGVKQDGNATHFFHRAIKAYNTGTRKRRKIHDQDFGDVRWHKTGRTKPVILNGAQKGCKKIMVLYMSSAGGGKAEKTNWVMHQYHLGTEEDENDGEFVISKVFYQQQHVKLGDIDEQDIPEVTEETI 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme75898g00001 149 Gene3D NAC domain 15 132 IPR036093 GO:0003677|GO:0006355
Trme75898g00001 149 SUPERFAMILY NAC domain 26 127 IPR036093 GO:0003677|GO:0006355
Trme75898g00001 149 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 24 134 IPR044799 GO:0003700
Trme75898g00001 149 ProSiteProfiles NAC domain profile. 1 127 IPR003441 GO:0003677|GO:0006355
Trme75898g00001 149 Pfam No apical meristem (NAM) protein 26 108 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme75898g00001 Trme-Chr75898 1 528 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme75898g00001 17 134 NAC Transcription Factor Family AT4G28500 58.537 3.77e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme75898g00001 NAM 2.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme75898g00001 - - tpra:123913753 258.455