Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme758861g00001 ATGAGCAGAGAACAAAGCCACGTTTTCACAACTCTTAGAGGAACAAGAGGTCATTTAGCACCAGAATGGATAACTAACTACGCGATTTCGGAGAAGAGTGATGTGTTTTGCTATGGAATGCTTTTGCTTGAGATTATTGGTGGAAGGAAAAACTATGATCAATGGGAAGGTT 172 0.4012 MSREQSHVFTTLRGTRGHLAPEWITNYAISEKSDVFCYGMLLLEIIGGRKNYDQWEG 57
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme758861g00001 57 Pfam Protein tyrosine and serine/threonine kinase 17 55 IPR001245 GO:0004672|GO:0006468
Trme758861g00001 57 Gene3D Transferase(Phosphotransferase) domain 1 1 56 - -
Trme758861g00001 57 ProSiteProfiles Protein kinase domain profile. 1 57 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme758861g00001 57 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 54 - -
Trme758861g00001 57 SUPERFAMILY Protein kinase-like (PK-like) 5 56 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme758861g00001 Trme-Chr758861 1 172 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme758861g00001 1 51 Receptor kinase-like Gene Family AT5G20050 58.824 1.20e-18 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trme758861g00001 PK_Tyr_Ser-Thr 5.5e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme758861g00001 - - gmx:100786024 117.857