Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme75849g00001 GATGTAGACCTCAACAAATCTGAACCTTGGGATTTACCATGGAAAGCTAAAATGGGAGAAAAAGAATGGTACTTTTTCTGTGTGAGAGACAGAAAATACCCAACTGGGTTGAGGACAAACAGAGCAACAGAACAAGGTTATTGGAAAGCTACTGGGAAAGATAAAGAGATTTTCAAAGGAAAATCTTTGGTTGGAATGAAGAAAACTCTTGTTTTCTACAAAGGAAGAGCACCTAAAGGAGAAAAAAGTAATTGGGTCATGCATGAATATCGACTTGAGGGTAAATTTTCTGTTCATAATCTTCCCAAAGCTGCAAAGGGTGTTTCAGAAGAGTTCAGCTGGTAA 345 0.3797 DVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEQGYWKATGKDKEIFKGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSVHNLPKAAKGVSEEFSW 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme75849g00001 114 SUPERFAMILY NAC domain 1 100 IPR036093 GO:0003677|GO:0006355
Trme75849g00001 114 FunFam NAC domain-containing protein 100-like 1 111 - -
Trme75849g00001 114 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 97 - -
Trme75849g00001 114 Pfam No apical meristem (NAM) protein 1 92 IPR003441 GO:0003677|GO:0006355
Trme75849g00001 114 Gene3D NAC domain 1 113 IPR036093 GO:0003677|GO:0006355
Trme75849g00001 114 ProSiteProfiles NAC domain profile. 1 114 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme75849g00001 Trme-Chr75849 1 616 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme75849g00001 1 106 NAC Transcription Factor Family AT5G39610 89.623 5.65e-68 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme75849g00001 NAM 1.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme75849g00001 - - cam:101502392 228.024